Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC090819.1-201ENST00000523800 1111 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 OR1F2P-201ENST00000570470 933 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 MIR4691-201ENST00000583764 85 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 CIR1P2-201ENST00000514821 1342 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 VN2R3P-201ENST00000422626 1412 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AL592437.2-201ENST00000421655 2434 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC126323.6-202ENST00000568092 3511 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AL590763.1-201ENST00000398297 1545 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 RNA5SP428-201ENST00000365129 132 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 GTF3AP1-201ENST00000416942 1004 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 BMS1P13-201ENST00000417301 885 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 E2F6P2-201ENST00000420708 748 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC009965.2-201ENST00000425328 970 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AL451139.1-201ENST00000434718 346 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AL163193.1-201ENST00000444895 788 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 RAD1P2-201ENST00000446414 663 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 HMGB3P14-201ENST00000494195 599 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 PCNAP1-201ENST00000505363 709 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 SNORD116-26-201ENST00000516006 96 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 RNA5SP34-201ENST00000516887 130 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 RNU6-709P-201ENST00000517257 104 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 VTA1P2-201ENST00000520205 911 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 IGLV2-28-201ENST00000520681 304 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC008083.2-201ENST00000546707 476 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC087477.6-201ENST00000559595 843 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC097505.1-201ENST00000610199 565 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC139769.3-201ENST00000618383 175 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 AP006248.2-201ENST00000623309 592 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC002044.3-201ENST00000623314 541 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 AC006453.5-201ENST00000636451 619 ntBASIC4.85□□□□□ -1.63
VPS39Q96JC1 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS39Q96JC1 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS39Q96JC1 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS39Q96JC1 MAPK10-286ENST00000641208 8747 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC120338.1-201ENST00000625074 1541 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL359715.4-201ENST00000606629 1436 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC096656.1-201ENST00000623826 1364 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 RNU6-171P-201ENST00000384354 107 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 MIR323B-201ENST00000385269 82 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 RNA5SP345-201ENST00000410646 108 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 FABP7P2-201ENST00000429946 379 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 NDUFA5P10-201ENST00000432147 357 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC004938.1-201ENST00000438468 308 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 Z99127.2-201ENST00000441426 334 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL627224.1-201ENST00000448334 444 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AURKAPS1-201ENST00000451805 1212 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC108751.2-201ENST00000469993 231 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 BX284632.1-201ENST00000478218 541 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC090114.3-201ENST00000479267 829 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms