Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC069304.1-201ENST00000491593 704 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 RPS27AP16-201ENST00000492222 470 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 OR5BC1P-201ENST00000529327 739 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 CDRT1-208ENST00000630868 794 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AL161912.2-201ENST00000565707 3007 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 OR51H2P-202ENST00000641424 3046 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 NPM1P26-201ENST00000426339 738 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 YME1L1P1-201ENST00000429435 297 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 RPS7P7-201ENST00000463499 571 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 RPL7L1P8-201ENST00000469911 741 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AK4P6-201ENST00000505168 528 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AGGF1P6-201ENST00000569213 976 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 AC097634.1-201ENST00000604491 2467 ntBASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
CCDC88AQ3V6T2 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.52□□□□□ -1.52
CCDC88AQ3V6T2 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.52□□□□□ -1.52
CCDC88AQ3V6T2 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 SNORA62.3-201ENST00000365110 153 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AMZ2P2-201ENST00000406819 1057 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 HMGN2P27-201ENST00000427352 270 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC104651.2-201ENST00000447549 528 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC090686.1-201ENST00000481577 749 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 AP003400.2-201ENST00000624036 666 ntBASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC88AQ3V6T2 RNA5SP119-201ENST00000362715 117 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL161909.1-201ENST00000397390 712 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC097374.1-203ENST00000400783 485 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 RPL21P43-201ENST00000425440 472 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 RPL21P91-201ENST00000429231 479 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL356276.2-201ENST00000435919 558 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 RPS29P7-201ENST00000439662 171 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 RPL23AP2-201ENST00000471227 466 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 DSTNP2-201ENST00000504533 515 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL354984.3-201ENST00000604803 325 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC244100.1-202ENST00000621554 382 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC015804.1-201ENST00000622935 435 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL139254.3-201ENST00000641097 674 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 LINC00622-201ENST00000562811 1570 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 OR5P1P-201ENST00000299512 925 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 RNA5SP372-201ENST00000390836 115 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL590762.2-201ENST00000395798 571 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC105233.3-201ENST00000531125 744 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC130352.1-201ENST00000602979 661 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 MIR6875-201ENST00000617506 72 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AC112484.5-201ENST00000624189 228 ntBASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms