Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 AL356583.2-201ENST00000426536 280 ntBASIC6.01□□□□□ -1.45
RNF4P78317 USP12PX-201ENST00000432383 1057 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 ARMC4P1-201ENST00000438905 707 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 AL033528.1-201ENST00000453780 140 ntBASIC6.01□□□□□ -1.45
RNF4P78317 RPL29P23-201ENST00000486188 442 ntBASIC6.01□□□□□ -1.45
RNF4P78317 LARP1BP2-201ENST00000486594 519 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC069439.1-201ENST00000494739 167 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC022206.1-201ENST00000495947 347 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC6.01□□□□□ -1.45
RNF4P78317 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 AC010342.1-201ENST00000514047 877 ntBASIC6.01□□□□□ -1.45
RNF4P78317 SNORA48.10-201ENST00000516965 160 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AL133399.1-201ENST00000527476 298 ntBASIC6.01□□□□□ -1.45
RNF4P78317 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.01□□□□□ -1.45
RNF4P78317 UBE2FP2-201ENST00000566646 462 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC090751.1-201ENST00000566966 267 ntBASIC6.01□□□□□ -1.45
RNF4P78317 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC6.01□□□□□ -1.45
RNF4P78317 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 AC233280.2-201ENST00000603917 1070 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC112230.1-201ENST00000604342 547 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 MIR6889-201ENST00000613185 59 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC008115.3-201ENST00000614874 549 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC008250.2-201ENST00000615261 205 ntBASIC6.01□□□□□ -1.45
RNF4P78317 DUXAP9-208ENST00000622815 614 ntBASIC6.01□□□□□ -1.45
RNF4P78317 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.01□□□□□ -1.45
RNF4P78317 AL161912.4-201ENST00000623889 2468 ntBASIC6.01□□□□□ -1.45
RNF4P78317 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
RNF4P78317 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
RNF4P78317 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6□□□□□ -1.45
RNF4P78317 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
RNF4P78317 PABPC1P8-201ENST00000452851 2086 ntBASIC6□□□□□ -1.45
RNF4P78317 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6□□□□□ -1.45
RNF4P78317 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6□□□□□ -1.45
RNF4P78317 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 AC006213.6-201ENST00000623722 4179 ntBASIC6□□□□□ -1.45
RNF4P78317 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC6□□□□□ -1.45
RNF4P78317 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC6□□□□□ -1.45
RNF4P78317 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 RNA5SP188-201ENST00000362916 129 ntBASIC6□□□□□ -1.45
RNF4P78317 Y_RNA.97-201ENST00000363094 102 ntBASIC6□□□□□ -1.45
RNF4P78317 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 Y_RNA.453-201ENST00000384223 109 ntBASIC6□□□□□ -1.45
RNF4P78317 PRELID1P1-201ENST00000403549 660 ntBASIC6□□□□□ -1.45
RNF4P78317 AL023284.3-201ENST00000407767 334 ntBASIC6□□□□□ -1.45
RNF4P78317 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 AC092634.6-201ENST00000418558 192 ntBASIC6□□□□□ -1.45
RNF4P78317 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC6□□□□□ -1.45
RNF4P78317 MTCO3P1-205ENST00000422088 832 ntBASIC6□□□□□ -1.45
RNF4P78317 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC6□□□□□ -1.45
RNF4P78317 TRIM60P3Y-201ENST00000432201 673 ntBASIC6□□□□□ -1.45
RNF4P78317 IGLV3-4-201ENST00000432300 244 ntBASIC6□□□□□ -1.45
RNF4P78317 GDI2P2-201ENST00000445131 608 ntBASIC6□□□□□ -1.45
RNF4P78317 MTND3P10-201ENST00000450967 341 ntBASIC6□□□□□ -1.45
RNF4P78317 AC092001.1-201ENST00000453012 261 ntBASIC6□□□□□ -1.45
RNF4P78317 RN7SL39P-201ENST00000462264 297 ntBASIC6□□□□□ -1.45
RNF4P78317 AC005165.2-201ENST00000466070 380 ntBASIC6□□□□□ -1.45
RNF4P78317 AC074386.1-201ENST00000476560 767 ntBASIC6□□□□□ -1.45
RNF4P78317 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6□□□□□ -1.45
RNF4P78317 AC005017.1-201ENST00000482002 490 ntBASIC6□□□□□ -1.45
RNF4P78317 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 DUTP7-201ENST00000507982 486 ntBASIC6□□□□□ -1.45
RNF4P78317 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 NDUFB4P2-201ENST00000509515 391 ntBASIC6□□□□□ -1.45
RNF4P78317 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6□□□□□ -1.45
RNF4P78317 RNU6-430P-201ENST00000517078 107 ntBASIC6□□□□□ -1.45
RNF4P78317 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms