Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC144521.1-201ENST00000607148 956 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC116651.1-201ENST00000609724 556 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC100827.5-201ENST00000615883 426 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC091953.3-201ENST00000623220 236 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC106858.1-201ENST00000637497 429 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.58□□□□□ -1.68
SOX3P41225 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.58□□□□□ -1.68
SOX3P41225 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SOX3P41225 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 ECM1P2-201ENST00000503354 1577 ntBASIC4.57□□□□□ -1.68
SOX3P41225 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 AC099654.2-201ENST00000433031 1980 ntBASIC4.57□□□□□ -1.68
SOX3P41225 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 AC103591.2-201ENST00000265259 766 ntBASIC4.57□□□□□ -1.68
SOX3P41225 RNU6-249P-201ENST00000363016 102 ntBASIC4.57□□□□□ -1.68
SOX3P41225 RNU6-609P-201ENST00000365459 107 ntBASIC4.57□□□□□ -1.68
SOX3P41225 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 GAPDHP15-201ENST00000398586 975 ntBASIC4.57□□□□□ -1.68
SOX3P41225 LRRC37BP1-201ENST00000398851 714 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC002524.1-201ENST00000411687 547 ntBASIC4.57□□□□□ -1.68
SOX3P41225 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 EIF4A1P1-201ENST00000420241 934 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC093084.1-201ENST00000424233 687 ntBASIC4.57□□□□□ -1.68
SOX3P41225 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.57□□□□□ -1.68
SOX3P41225 AC093414.1-201ENST00000434712 514 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 SCAND3P1-201ENST00000439854 1060 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AL450023.3-201ENST00000440592 271 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AL691482.1-201ENST00000453255 87 ntBASIC4.57□□□□□ -1.68
SOX3P41225 GYG1P1-201ENST00000460864 698 ntBASIC4.57□□□□□ -1.68
SOX3P41225 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 AC090686.1-201ENST00000481577 749 ntBASIC4.57□□□□□ -1.68
SOX3P41225 SUMO1P1-201ENST00000497904 306 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.57□□□□□ -1.68
SOX3P41225 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 HMGN1P15-201ENST00000513870 295 ntBASIC4.57□□□□□ -1.68
SOX3P41225 RPL23AP53-201ENST00000521854 457 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AL390726.5-202ENST00000564800 256 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 MIR4480-201ENST00000582492 71 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AL031320.1-201ENST00000604177 357 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 AC019206.1-201ENST00000621938 425 ntBASIC4.57□□□□□ -1.68
SOX3P41225 AC097460.3-201ENST00000623099 442 ntBASIC4.57□□□□□ -1.68
SOX3P41225 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SOX3P41225 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SOX3P41225 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX3P41225 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX3P41225 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.56□□□□□ -1.68
SOX3P41225 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SOX3P41225 RNU6-650P-201ENST00000365658 111 ntBASIC4.56□□□□□ -1.68
SOX3P41225 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 RBMY2KP-201ENST00000418221 992 ntBASIC4.56□□□□□ -1.68
SOX3P41225 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 ARL2BPP3-201ENST00000421226 480 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 MTCYBP29-201ENST00000436327 1006 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC006466.1-201ENST00000438721 289 ntBASIC4.56□□□□□ -1.68
SOX3P41225 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms