Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC112206.4-201ENST00000515142 405 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 CASP1-212ENST00000531166 300 ntTSL 5 BASIC6.53□□□□□ -1.36
HMGB1P09429 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HMGB1P09429 DYNLL1P4-201ENST00000549314 266 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.53□□□□□ -1.36
HMGB1P09429 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.53□□□□□ -1.36
HMGB1P09429 AL049872.1-201ENST00000556323 322 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AC023825.1-201ENST00000566704 1030 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AC233702.9-201ENST00000581528 203 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.53□□□□□ -1.36
HMGB1P09429 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.53□□□□□ -1.36
HMGB1P09429 AC068620.3-201ENST00000602749 560 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.53□□□□□ -1.36
HMGB1P09429 VN1R74P-201ENST00000613259 503 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AC008115.3-201ENST00000614874 549 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.53□□□□□ -1.36
HMGB1P09429 MIR6778-201ENST00000617912 73 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.53□□□□□ -1.36
HMGB1P09429 CU639417.4-201ENST00000623928 207 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 BX649567.1-201ENST00000642071 1134 ntBASIC6.53□□□□□ -1.36
HMGB1P09429 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HMGB1P09429 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
HMGB1P09429 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
HMGB1P09429 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
HMGB1P09429 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HMGB1P09429 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HMGB1P09429 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HMGB1P09429 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.36
HMGB1P09429 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HMGB1P09429 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HMGB1P09429 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 RNU5B-4P-201ENST00000363508 111 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 RNA5SP122-201ENST00000384457 108 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 SNORD56.6-201ENST00000384569 71 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 AC092638.1-201ENST00000411966 1275 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 AC009784.1-201ENST00000426484 460 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 MTND2P40-201ENST00000436718 841 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 AC002504.1-201ENST00000438281 691 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 RPL7P33-201ENST00000444159 742 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 AC092106.1-201ENST00000444291 373 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 H2AFZP5-201ENST00000446960 382 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 SEPT14P24-201ENST00000447236 180 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 S100A11P1-201ENST00000477525 312 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 RPL21P103-201ENST00000479921 488 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC012170.1-201ENST00000495139 359 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 SNX5P1-201ENST00000505757 1041 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 RNU2-30P-201ENST00000516209 141 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 STX3-204ENST00000530221 534 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.52□□□□□ -1.37
HMGB1P09429 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.52□□□□□ -1.37
HMGB1P09429 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC012616.1-201ENST00000600294 197 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 AL020997.3-201ENST00000602843 359 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 YWHAQP7-201ENST00000603536 658 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 AP003476.1-201ENST00000623984 516 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 MIR4496-201ENST00000635896 61 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC6.52□□□□□ -1.37
HMGB1P09429 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 HSPA8P18-201ENST00000439846 1928 ntBASIC6.52□□□□□ -1.37
HMGB1P09429 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
HMGB1P09429 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HMGB1P09429 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
HMGB1P09429 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HMGB1P09429 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HMGB1P09429 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HMGB1P09429 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HMGB1P09429 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
HMGB1P09429 AC100757.1-201ENST00000616872 1835 ntBASIC6.51□□□□□ -1.37
HMGB1P09429 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.51□□□□□ -1.37
HMGB1P09429 AC025125.1-201ENST00000624743 1922 ntBASIC6.51□□□□□ -1.37
HMGB1P09429 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HMGB1P09429 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
HMGB1P09429 AC234772.1-201ENST00000377927 937 ntBASIC6.51□□□□□ -1.37
HMGB1P09429 RPSAP35-201ENST00000413753 818 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms