Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SNORA48.7-201ENST00000391302 135 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.27□□□□□ -1.57
COL4A1P02462 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A1P02462 RNA5SP44-201ENST00000410446 133 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 BMS1P19-201ENST00000433925 393 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AL162151.2-201ENST00000448875 158 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 ATP5G1P3-201ENST00000463301 410 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 RPL7P22-201ENST00000466005 733 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AC022034.3-201ENST00000471393 478 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.27□□□□□ -1.57
COL4A1P02462 RNA5SP73-201ENST00000516744 108 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 RNU6-352P-201ENST00000516908 107 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.27□□□□□ -1.57
COL4A1P02462 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.27□□□□□ -1.57
COL4A1P02462 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.27□□□□□ -1.57
COL4A1P02462 AL353726.1-201ENST00000614041 1000 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 AC034229.5-201ENST00000624258 185 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 CDRT1-208ENST00000630868 794 ntBASIC5.27□□□□□ -1.57
COL4A1P02462 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL4A1P02462 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A1P02462 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A1P02462 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A1P02462 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.26□□□□□ -1.57
COL4A1P02462 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 AP005435.3-201ENST00000531260 3198 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.26□□□□□ -1.57
COL4A1P02462 MRPL50P1-201ENST00000431951 384 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 AC108145.1-201ENST00000503770 153 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.26□□□□□ -1.57
COL4A1P02462 TVP23BP1-201ENST00000557500 617 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A1P02462 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.26□□□□□ -1.57
COL4A1P02462 COX6CP4-201ENST00000605798 228 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 AC012442.3-202ENST00000636742 206 ntBASIC5.26□□□□□ -1.57
COL4A1P02462 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
COL4A1P02462 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A1P02462 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A1P02462 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A1P02462 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A1P02462 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A1P02462 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.25□□□□□ -1.57
COL4A1P02462 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL4A1P02462 SNORD96B-201ENST00000386148 79 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 TRAV35-201ENST00000390462 330 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL4A1P02462 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A1P02462 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.25□□□□□ -1.57
COL4A1P02462 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.25□□□□□ -1.57
COL4A1P02462 AC010374.1-201ENST00000503762 1237 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.25□□□□□ -1.57
COL4A1P02462 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL4A1P02462 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.25□□□□□ -1.57
COL4A1P02462 TMEM30CP-203ENST00000637814 1035 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 AC104623.2-202ENST00000623477 4002 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 AC007998.4-201ENST00000612496 2533 ntBASIC5.25□□□□□ -1.57
COL4A1P02462 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL4A1P02462 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
COL4A1P02462 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.25□□□□□ -1.57
COL4A1P02462 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A1P02462 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A1P02462 RNU1-20P-201ENST00000363314 162 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 MIR921-201ENST00000401133 56 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 EIF4A1P1-201ENST00000420241 934 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A1P02462 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A1P02462 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A1P02462 MIR2116-201ENST00000517221 80 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 MIR4286-201ENST00000580651 93 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A1P02462 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 CYP1D1P-201ENST00000416662 1433 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A1P02462 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A1P02462 CCAT2-201ENST00000630920 1752 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A1P02462 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
COL4A1P02462 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
COL4A1P02462 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A1P02462 MIR208A-201ENST00000362287 71 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
COL4A1P02462 AC062016.2-201ENST00000420950 676 ntBASIC5.24□□□□□ -1.57
COL4A1P02462 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms