Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.11□□□□□ -1.59
CLDN3O15551 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CLDN3O15551 AL049697.2-201ENST00000403708 294 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AL592291.1-201ENST00000403830 352 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 AC119751.6-201ENST00000416712 186 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 MTCYBP7-201ENST00000419540 1134 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.1□□□□□ -1.59
CLDN3O15551 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 NMNAT1P2-201ENST00000435192 860 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RPL7L1P1-201ENST00000448259 785 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AL591363.1-201ENST00000450091 483 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 ZNF137P-201ENST00000456718 1920 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RN7SL354P-201ENST00000469282 294 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RN7SL205P-201ENST00000490174 284 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RPL23AP72-201ENST00000492447 435 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RPL36AP41-201ENST00000493820 306 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC091917.2-201ENST00000505002 744 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC068993.1-201ENST00000546724 589 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC105129.1-201ENST00000560250 297 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.1□□□□□ -1.59
CLDN3O15551 RN7SL52P-201ENST00000584271 284 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC124856.1-201ENST00000600819 896 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 AL133406.3-201ENST00000606817 541 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 AL356274.1-201ENST00000617064 410 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RN7SL722P-201ENST00000617780 284 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 RN7SL565P-201ENST00000618246 284 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 AC021106.3-201ENST00000623925 531 ntBASIC5.1□□□□□ -1.59
CLDN3O15551 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
CLDN3O15551 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CLDN3O15551 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
CLDN3O15551 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.09□□□□□ -1.59
CLDN3O15551 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 RNU4-7P-201ENST00000364758 141 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 SNORA71.2-201ENST00000364941 134 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 SNORA70F-201ENST00000384142 135 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 RNU6-398P-201ENST00000384143 109 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 VDAC2P1-201ENST00000399358 958 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 OR6C64P-201ENST00000419708 825 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 EIF4A1P1-201ENST00000420241 934 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AC013470.3-201ENST00000420252 1194 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 HMGB1P32-201ENST00000425971 565 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 RPL31P20-201ENST00000449593 360 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 CEACAMP6-201ENST00000452007 574 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC112206.1-201ENST00000468416 477 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AC104763.1-201ENST00000475274 360 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 CR383656.6-201ENST00000550518 394 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.09□□□□□ -1.59
CLDN3O15551 AC023813.4-201ENST00000607580 580 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 AC007620.3-201ENST00000608131 497 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 MIR7703-201ENST00000620784 77 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 U3.53-201ENST00000628922 216 ntBASIC5.09□□□□□ -1.59
CLDN3O15551 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CLDN3O15551 AL672167.1-203ENST00000641299 2975 ntBASIC5.09□□□□□ -1.6
CLDN3O15551 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.6
CLDN3O15551 AL031119.1-201ENST00000404707 1879 ntBASIC5.09□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms