Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SMIM28A0A1B0GU29 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AL672167.1-205ENST00000641112 3080 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 OR5P1P-201ENST00000299512 925 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 OR4K17-201ENST00000315543 1032 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 RN7SKP186-201ENST00000365371 303 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 EI24P3-201ENST00000399046 1062 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 Z74021.1-201ENST00000423610 407 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC234779.1-201ENST00000425910 285 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC011998.1-201ENST00000433403 117 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 RPS26P2-201ENST00000440331 348 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 RN7SL98P-201ENST00000462271 300 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 TRBV8-1-201ENST00000481590 279 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 RN7SKP122-201ENST00000515923 296 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 SNORA26.10-201ENST00000516427 141 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC008676.3-201ENST00000521237 435 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 MTND2P17-201ENST00000550281 688 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 LSM3P2-201ENST00000551246 273 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 KPNA2P3-201ENST00000584190 848 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AL590392.1-201ENST00000604960 446 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 IMMP1LP1-201ENST00000605170 488 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC006338.2-201ENST00000616864 791 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC090017.1-201ENST00000548612 1779 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 THAP12P5-201ENST00000405864 2275 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AP001284.1-201ENST00000528393 2118 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 AC139769.1-204ENST00000472297 1931 ntBASIC4.82□□□□□ -1.64
SMIM28A0A1B0GU29 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AL513548.1-201ENST00000562904 1724 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 STX3-208ENST00000641815 3236 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC008033.1-201ENST00000216407 1162 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 SNORA70.2-201ENST00000364506 135 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 FCF1P5-201ENST00000406490 482 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AL445213.1-201ENST00000412589 747 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RPL21P108-201ENST00000413857 481 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RPL36AP10-201ENST00000421785 322 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RPL7P33-201ENST00000444159 742 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 PHBP16-201ENST00000446318 950 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC104849.1-201ENST00000462623 405 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RPS27AP17-201ENST00000463344 455 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RN7SL303P-201ENST00000469773 251 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 ASNSP4-201ENST00000511103 447 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 RNU6-943P-201ENST00000516960 98 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 IGKV2D-10-201ENST00000520194 281 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC091178.1-203ENST00000584586 279 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC090181.2-201ENST00000602975 672 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 AC114781.5-201ENST00000615297 108 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMIM28A0A1B0GU29 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms