Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AL672167.1-204ENST00000641875 3017 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 RPL23AP38-201ENST00000423801 469 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 BTF3P6-201ENST00000448054 499 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 MIR2116-201ENST00000517221 80 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC104623.2-202ENST00000623477 4002 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC053481.1-201ENST00000467217 306 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC006116.5-201ENST00000591936 559 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 AC024220.1-201ENST00000603675 484 ntBASIC5.56□□□□□ -1.52
CCDC88AQ3V6T2 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC100778.3-201ENST00000580060 1750 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 SNORA71.3-201ENST00000362582 128 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AL139039.2-201ENST00000407436 479 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 RNU6-628P-201ENST00000410675 107 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 RN7SKP33-201ENST00000410942 340 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC008280.1-201ENST00000418851 412 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 HMGB3P5-201ENST00000428894 612 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 RPL23AP52-201ENST00000439311 478 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 PRSS3P4-201ENST00000453323 162 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 SCARNA15-201ENST00000607520 4325 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 AC011755.1-201ENST00000623763 2049 ntBASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
CCDC88AQ3V6T2 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL359922.3-201ENST00000624779 1670 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL627171.1-201ENST00000618845 1308 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 MT-RNR1-201ENST00000389680 954 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 BTF3P10-201ENST00000433415 495 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 TRMT10BP1-201ENST00000519377 943 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AC009120.7-201ENST00000623452 780 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL592182.3-201ENST00000642132 3304 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 SNORA63.1-201ENST00000362493 131 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 RNU6-525P-201ENST00000363685 104 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 RPL23AP43-201ENST00000446445 471 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 AL133547.1-201ENST00000448546 220 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 DHFRP3-201ENST00000455595 559 ntBASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC88AQ3V6T2 RPL35P6-201ENST00000490024 372 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms