Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC104964.3-201ENST00000606115 2860 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 RNU6-666P-201ENST00000363499 107 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 RNU6-468P-201ENST00000384003 109 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 RNU6-532P-201ENST00000384318 107 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 EI24P3-201ENST00000399046 1062 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC010385.1-201ENST00000412374 256 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 GTF2IP2-201ENST00000424290 697 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 CACYBPP1-201ENST00000438592 684 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AL645931.1-201ENST00000439737 410 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 HMGB1P26-201ENST00000452520 628 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 ATP5LP5-201ENST00000483050 299 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AL162431.4-201ENST00000604674 411 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC006338.2-201ENST00000616864 791 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC078880.5-201ENST00000617845 421 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 CASC19-284ENST00000642142 1868 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 OR4F13P-202ENST00000560066 2054 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 IRF5P1-201ENST00000504852 2164 ntBASIC5.11□□□□□ -1.59
COL28A1Q2UY09 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
COL28A1Q2UY09 OR55B1P-203ENST00000641518 2602 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC007996.1-201ENST00000620414 2821 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC144833.1-201ENST00000567953 4089 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 OR9G4-201ENST00000302957 984 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 SNORA70.6-201ENST00000383934 134 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RSL24D1P1-201ENST00000404972 493 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL009179.1-201ENST00000406085 265 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 EIF4A1P1-201ENST00000420241 934 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 OR2AM1P-201ENST00000422137 422 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RPL34P26-201ENST00000445636 354 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 MTATP6P14-201ENST00000455189 673 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RPL7AP28-201ENST00000464513 571 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RPS17P11-201ENST00000474297 293 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 TPT1P3-201ENST00000492841 512 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms