Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC018714.1-201ENST00000605028 208 ntBASIC5.55□□□□□ -1.52
MSX2P35548 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 AC126118.1-201ENST00000607744 628 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL451049.1-201ENST00000608672 497 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL365181.4-201ENST00000609800 547 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC097505.1-201ENST00000610199 565 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC008083.4-201ENST00000615076 444 ntBASIC5.55□□□□□ -1.52
MSX2P35548 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.55□□□□□ -1.52
MSX2P35548 MIR6133-201ENST00000617057 108 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 AC073055.1-201ENST00000456901 1621 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC007938.2-201ENST00000604666 2634 ntBASIC5.55□□□□□ -1.52
MSX2P35548 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 AC125336.1-201ENST00000508893 2827 ntBASIC5.54□□□□□ -1.52
MSX2P35548 MAPK10-338ENST00000641647 3362 ntBASIC5.54□□□□□ -1.52
MSX2P35548 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSX2P35548 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 RNU6-931P-201ENST00000363850 107 ntBASIC5.54□□□□□ -1.52
MSX2P35548 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 RPL11P3-201ENST00000395256 523 ntBASIC5.54□□□□□ -1.52
MSX2P35548 ATP5F1P4-201ENST00000397288 746 ntBASIC5.54□□□□□ -1.52
MSX2P35548 SNRPEP6-201ENST00000407465 277 ntBASIC5.54□□□□□ -1.52
MSX2P35548 RNA5SP156-201ENST00000410250 110 ntBASIC5.54□□□□□ -1.52
MSX2P35548 RNU2-18P-201ENST00000411224 162 ntBASIC5.54□□□□□ -1.52
MSX2P35548 MTND1P21-201ENST00000412991 285 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 AP003385.1-201ENST00000426387 893 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC099677.3-201ENST00000427081 395 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 PSMD10P2-201ENST00000432890 672 ntBASIC5.54□□□□□ -1.52
MSX2P35548 OR3D1P-201ENST00000438288 955 ntBASIC5.54□□□□□ -1.52
MSX2P35548 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 RPL5P25-201ENST00000441148 775 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC023512.1-201ENST00000444513 499 ntBASIC5.54□□□□□ -1.52
MSX2P35548 IGBP1P3-201ENST00000447449 1000 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 AL359385.1-201ENST00000456509 365 ntBASIC5.54□□□□□ -1.52
MSX2P35548 RN7SL83P-201ENST00000468131 297 ntBASIC5.54□□□□□ -1.52
MSX2P35548 H3F3AP5-201ENST00000475267 429 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC021006.1-201ENST00000489849 553 ntBASIC5.54□□□□□ -1.52
MSX2P35548 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 AC008837.2-201ENST00000513076 418 ntBASIC5.54□□□□□ -1.52
MSX2P35548 PRELID3BP4-201ENST00000515476 571 ntBASIC5.54□□□□□ -1.52
MSX2P35548 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 DUXAP2-201ENST00000519198 589 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC106038.2-201ENST00000520706 568 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.54□□□□□ -1.52
MSX2P35548 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.54□□□□□ -1.52
MSX2P35548 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 AC016957.1-201ENST00000534895 309 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.54□□□□□ -1.52
MSX2P35548 AC079171.1-201ENST00000568788 914 ntBASIC5.54□□□□□ -1.52
MSX2P35548 LINC00556-201ENST00000569603 412 ntBASIC5.54□□□□□ -1.52
MSX2P35548 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 MTCO1P40-201ENST00000574371 625 ntBASIC5.54□□□□□ -1.52
MSX2P35548 MIR4732-201ENST00000581873 76 ntBASIC5.54□□□□□ -1.52
MSX2P35548 MIR4719-201ENST00000585233 84 ntBASIC5.54□□□□□ -1.52
MSX2P35548 WBP1LP12-201ENST00000604449 331 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC128687.1-201ENST00000605304 619 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC090186.1-201ENST00000605991 572 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC116651.1-201ENST00000609724 556 ntBASIC5.54□□□□□ -1.52
MSX2P35548 Z99129.1-201ENST00000612510 255 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AC010678.1-201ENST00000614118 713 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL121873.1-201ENST00000616013 524 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL607023.1-201ENST00000620045 248 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL357562.1-201ENST00000624911 609 ntBASIC5.54□□□□□ -1.52
MSX2P35548 MFSD8-245ENST00000641743 948 ntBASIC5.54□□□□□ -1.52
MSX2P35548 AL137100.1-201ENST00000556703 1620 ntBASIC5.54□□□□□ -1.52
MSX2P35548 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSX2P35548 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
MSX2P35548 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
MSX2P35548 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSX2P35548 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSX2P35548 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms