Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC017002.4-201ENST00000604721 1525 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RNU105B-201ENST00000364478 208 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RN7SKP69-201ENST00000365390 305 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL353625.1-202ENST00000366273 571 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 MIR1277-201ENST00000408536 78 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 SNORA77.2-201ENST00000408571 112 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RNU6-920P-201ENST00000410926 92 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 TATDN1P1-201ENST00000414123 891 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RPL35AP31-201ENST00000418340 337 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC006960.1-201ENST00000419980 153 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RPL5P25-201ENST00000441148 775 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL606662.1-201ENST00000445763 553 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC233982.1-201ENST00000451247 436 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AURKAPS1-201ENST00000451805 1212 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC073476.1-201ENST00000452854 407 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC044810.1-201ENST00000480271 711 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 RN7SL362P-201ENST00000494228 267 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC112198.1-201ENST00000505369 1220 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC113367.2-201ENST00000505749 160 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC021146.7-201ENST00000509604 775 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC046134.1-201ENST00000514454 666 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 NPM1P52-201ENST00000518264 846 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 TBCA-206ENST00000518338 551 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC010198.2-201ENST00000550612 259 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 CASC16-202ENST00000563844 610 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 EIF5A2P1-201ENST00000564027 460 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ROCK1P1-201ENST00000573767 549 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ARGFXP2-201ENST00000579304 949 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 MIR3671-201ENST00000580455 88 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC112220.3-201ENST00000605502 502 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL135999.3-201ENST00000610501 812 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL121873.1-201ENST00000616013 524 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AP002505.2-201ENST00000623585 696 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 FER-210ENST00000628534 558 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 OR8G3P-202ENST00000641572 1255 ntBASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC39Q9UFE4 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC087359.1-201ENST00000508335 1740 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC008033.1-201ENST00000216407 1162 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RNA5SP187-201ENST00000384400 119 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AL096829.1-201ENST00000413677 457 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RPS7P9-201ENST00000414704 586 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC023128.2-201ENST00000420880 1223 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RPL12P12-201ENST00000424633 501 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms