Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RNA5SP113-201ENST00000410486 84 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 SNORA79B-201ENST00000410557 148 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RAB28P1-201ENST00000411517 641 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 COX6CP13-201ENST00000428703 226 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MTCYBP29-201ENST00000436327 1006 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 OR52E3P-201ENST00000452083 936 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL513533.1-201ENST00000453728 415 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RN7SL481P-201ENST00000477764 299 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RN7SL346P-201ENST00000491561 294 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RPL23AP72-201ENST00000492447 435 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC103833.1-201ENST00000517442 172 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 OR4R2P-201ENST00000530815 597 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MTCYBP13-201ENST00000578634 1093 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AL512782.1-201ENST00000603093 364 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MTCO3P22-201ENST00000603219 784 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC005377.1-201ENST00000605126 456 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MIR6780A-201ENST00000615089 68 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MIR7703-201ENST00000620784 77 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AP001002.1-201ENST00000625148 1513 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 RNU1-32P-201ENST00000363937 159 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC007618.1-201ENST00000366455 732 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 HMGB3P7-201ENST00000400214 611 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AL356057.1-202ENST00000402263 756 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 SNORA77-201ENST00000408716 125 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC092017.2-201ENST00000427600 362 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 OR1H1P-201ENST00000448731 937 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 CYCSP53-201ENST00000455540 265 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC092691.2-201ENST00000461787 803 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC006967.1-201ENST00000467608 589 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC096741.1-201ENST00000472250 846 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC021087.2-201ENST00000504656 1203 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC021146.7-201ENST00000509604 775 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 MORF4L1P3-201ENST00000525966 950 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC018552.1-201ENST00000562099 811 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC233266.2-201ENST00000567067 528 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AL391358.1-201ENST00000605342 190 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms