Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 SMG1P6-201ENST00000532337 2930 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC092079.1-201ENST00000558620 1985 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 MIR421-201ENST00000365696 85 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 RNU6-532P-201ENST00000384318 107 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 SNORA70.10-201ENST00000384515 134 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 MIR298-201ENST00000401212 88 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AL358178.1-201ENST00000407698 397 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 SNORA77-201ENST00000408716 125 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AL356806.1-201ENST00000422524 916 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 RPL7P11-201ENST00000437586 658 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AL627224.1-201ENST00000448334 444 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 snoU13.1-201ENST00000459157 104 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC007537.2-201ENST00000472093 511 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 METTL15P1-201ENST00000481421 1045 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 CDH12P2-201ENST00000504393 298 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC021087.2-201ENST00000504656 1203 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 HMGB1P47-201ENST00000511281 589 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC034205.1-201ENST00000520621 638 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC022784.5-201ENST00000522241 437 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC009852.2-201ENST00000567898 485 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 RPL26P30-202ENST00000602923 645 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC123786.2-201ENST00000603459 275 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AP004372.1-201ENST00000604842 844 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AP001521.2-201ENST00000608772 546 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC006338.2-201ENST00000616864 791 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AP003497.2-201ENST00000624220 967 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 AC090017.1-201ENST00000548612 1779 ntBASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.04□□□□□ -1.6
HDDC3Q8N4P3 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL035079.1-201ENST00000405210 287 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC244453.4-201ENST00000419150 388 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC048351.1-201ENST00000420064 602 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 HSPE1P16-201ENST00000426640 348 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL606490.7-201ENST00000433136 191 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC004980.3-201ENST00000447046 365 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC234781.3-201ENST00000452540 973 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 GAPDHP56-201ENST00000506031 988 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 FABP5P6-201ENST00000510588 409 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC098976.1-201ENST00000513014 541 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 RNU6-491P-201ENST00000516099 110 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 MIR5096-201ENST00000583713 70 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AL512782.1-201ENST00000603093 364 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC005377.1-201ENST00000605126 456 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 AC026367.3-201ENST00000619032 590 ntBASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HDDC3Q8N4P3 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms