Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC231760.1-201ENST00000498002 260 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 RNU6-759P-201ENST00000516740 103 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 CDC42P3-201ENST00000518493 633 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 OR8I1P-201ENST00000529291 931 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AP000619.2-201ENST00000546014 969 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AL031985.2-201ENST00000600955 480 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AP001267.4-201ENST00000602598 545 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AL512329.2-201ENST00000607350 548 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC072039.2-201ENST00000608883 439 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC010975.3-201ENST00000618727 978 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 AC015660.5-201ENST00000623238 564 ntBASIC5.82□□□□□ -1.48
USP39Q53GS9 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP39Q53GS9 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
USP39Q53GS9 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP39Q53GS9 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.82□□□□□ -1.48
USP39Q53GS9 AC015799.1-201ENST00000622996 3122 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 PABPC1P6-201ENST00000445594 1829 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
USP39Q53GS9 Y_RNA.3-201ENST00000362331 103 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RNU5E-4P-201ENST00000364931 120 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RNU6-1283P-201ENST00000365314 105 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 GAPDHP42-201ENST00000406848 981 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC105402.1-201ENST00000413336 545 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 ARAFP1-201ENST00000422172 605 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 NANOGP2-201ENST00000435391 727 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RPS24P1-201ENST00000438550 371 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 OR7E116P-201ENST00000448529 957 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 ACA64.4-201ENST00000459070 127 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 CR383656.1-201ENST00000484916 377 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 RPL7P41-201ENST00000485823 957 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 MTND4LP26-201ENST00000518144 282 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AP003080.1-202ENST00000526526 915 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP39Q53GS9 HNRNPCP1-201ENST00000556181 766 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC234778.2-201ENST00000566241 354 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC006362.1-201ENST00000567392 174 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC091135.1-201ENST00000585943 307 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 OR51C1P-201ENST00000608504 942 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AL138478.1-201ENST00000612252 832 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AL359513.1-201ENST00000614364 557 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC091932.2-201ENST00000623014 291 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC091931.1-201ENST00000623488 728 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC010608.2-201ENST00000624830 470 ntBASIC5.81□□□□□ -1.48
USP39Q53GS9 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.81□□□□□ -1.48
USP39Q53GS9 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms