Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 OR1L6-202ENST00000373684 1044 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 RNA5SP241-201ENST00000391326 114 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 AL355143.1-201ENST00000407101 841 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 RNA5SP113-201ENST00000410486 84 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 UBE2D3P3-201ENST00000426992 425 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AC091180.1-201ENST00000462104 372 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 MTCO2P9-201ENST00000503214 694 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 OR51K1P-201ENST00000510214 950 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 IGKV1-32-201ENST00000519290 311 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AC234771.5-201ENST00000600161 514 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 ABI1P1-201ENST00000603375 1120 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 AL391358.1-201ENST00000605342 190 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 AP005432.1-201ENST00000580891 3485 ntBASIC5.34□□□□□ -1.55
USP41Q3LFD5 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.34□□□□□ -1.55
USP41Q3LFD5 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP41Q3LFD5 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
USP41Q3LFD5 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
USP41Q3LFD5 AL031595.2-201ENST00000624215 19071 ntBASIC5.34□□□□□ -1.56
USP41Q3LFD5 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.56
USP41Q3LFD5 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 RNU6-792P-201ENST00000363490 107 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 RNU6-1263P-201ENST00000384601 106 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 RNU2-22P-201ENST00000411266 212 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 RPL26P37-201ENST00000411983 438 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 RPL34P6-201ENST00000432390 345 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 HSFY7P-201ENST00000432672 318 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 MTCYBP29-201ENST00000436327 1006 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 HSFY8P-201ENST00000437934 318 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 RPS29P9-201ENST00000440360 171 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 ARAFP2-201ENST00000440565 559 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC011753.3-201ENST00000443436 406 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC004980.3-201ENST00000447046 365 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 HSFY5P-201ENST00000453726 309 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 OR11I1P-201ENST00000486033 954 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 SUMO1P1-201ENST00000497904 306 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 GSTP1P1-201ENST00000548078 319 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 TVP23CP2-201ENST00000571473 623 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 RN7SL290P-201ENST00000578661 300 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 BNIP3P27-201ENST00000599991 412 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 BNIP3P39-201ENST00000601077 554 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 MTATP6P2-201ENST00000603319 678 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AL139022.2-201ENST00000606934 443 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 MIR6780A-201ENST00000615089 68 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 AC091932.2-201ENST00000623014 291 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP41Q3LFD5 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP41Q3LFD5 AP001642.1-201ENST00000624727 2117 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 SAMMSON-226ENST00000642089 1582 ntBASIC5.33□□□□□ -1.56
USP41Q3LFD5 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms