Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL4A4P53420 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 AC008280.1-201ENST00000418851 412 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL4A4P53420 RPL23AP38-201ENST00000423801 469 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.84□□□□□ -1.63
COL4A4P53420 MRPL48P1-201ENST00000445390 636 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AC079804.1-201ENST00000461922 436 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AC090142.1-201ENST00000465776 462 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AC108751.2-201ENST00000469993 231 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.84□□□□□ -1.63
COL4A4P53420 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.84□□□□□ -1.63
COL4A4P53420 RN7SL691P-201ENST00000494487 301 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 NPM1P41-201ENST00000512920 831 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 SNORA67.7-201ENST00000516664 135 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.84□□□□□ -1.63
COL4A4P53420 OR8R1P-201ENST00000543943 764 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.84□□□□□ -1.63
COL4A4P53420 IPO5P1-202ENST00000600039 287 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.84□□□□□ -1.63
COL4A4P53420 MIR6867-201ENST00000610636 67 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL4A4P53420 AL359922.3-201ENST00000624779 1670 ntBASIC4.84□□□□□ -1.63
COL4A4P53420 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC4.84□□□□□ -1.64
COL4A4P53420 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
COL4A4P53420 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL4A4P53420 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL4A4P53420 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL4A4P53420 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL4A4P53420 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 SNORA62.3-201ENST00000365110 153 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AL359643.1-201ENST00000404109 423 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 RPS29P7-201ENST00000439662 171 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.83□□□□□ -1.64
COL4A4P53420 AL591473.1-201ENST00000464297 313 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 RPL35P6-201ENST00000490024 372 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 RNA5SP446-201ENST00000515955 82 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.83□□□□□ -1.64
COL4A4P53420 MIR8069-1-201ENST00000616627 86 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 MIR6891-201ENST00000618788 93 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 MIR8069-2-201ENST00000621412 86 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC012442.3-202ENST00000636742 206 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AL139254.3-201ENST00000641097 674 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 AC007529.1-201ENST00000418574 2178 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.83□□□□□ -1.64
COL4A4P53420 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC108467.2-201ENST00000617640 1597 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 AC090220.1-201ENST00000593078 1699 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC126323.6-202ENST00000568092 3511 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL4A4P53420 RN7SKP167-201ENST00000411047 285 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 RPL21P91-201ENST00000429231 479 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 H2AFZP5-201ENST00000446960 382 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC091959.2-201ENST00000477363 321 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 RPS27AP16-201ENST00000492222 470 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
COL4A4P53420 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC017100.2-201ENST00000584628 355 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC023762.1-201ENST00000603280 584 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.83□□□□□ -1.64
COL4A4P53420 AC022106.2-201ENST00000620114 757 ntBASIC4.83□□□□□ -1.64
COL4A4P53420 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL4A4P53420 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL4A4P53420 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL4A4P53420 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.82□□□□□ -1.64
COL4A4P53420 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 CPHL1P-201ENST00000461341 3407 ntBASIC4.82□□□□□ -1.64
COL4A4P53420 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL4A4P53420 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms