Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MTATP6P22-201ENST00000507369 598 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 GUSBP9-201ENST00000510138 584 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 SETP21-201ENST00000514799 892 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RNA5SP434-201ENST00000516647 121 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC025881.1-201ENST00000518851 512 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 BTG1P1-201ENST00000540396 508 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC011611.5-201ENST00000552477 578 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 ZNF322P1-201ENST00000568013 1209 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC027281.1-201ENST00000574178 758 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 ABBA01006766.1-201ENST00000584728 294 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL645933.2-201ENST00000606743 1207 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC009237.15-201ENST00000610252 501 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC090970.3-201ENST00000612566 866 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 MIR6813-201ENST00000621638 56 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC092326.2-201ENST00000624772 1561 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC016583.1-201ENST00000624221 2431 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RNU6-236P-201ENST00000363886 106 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ERHP2-201ENST00000402323 299 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RN7SKP166-201ENST00000410812 305 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RANP4-201ENST00000413361 655 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 USP9YP6-201ENST00000413550 854 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RPS15AP30-201ENST00000420976 390 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC010975.2-201ENST00000427781 588 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 TRIM60P3Y-201ENST00000432201 673 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 RPSAP32-201ENST00000432681 526 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ARPC3P1-201ENST00000437218 533 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 MED28P3-201ENST00000444288 531 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 USP9YP34-201ENST00000453983 808 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 SETP11-201ENST00000473027 690 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC004924.1-201ENST00000480160 781 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AP002453.1-201ENST00000492327 668 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 OR7E157P-201ENST00000494376 911 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 HMGB3P13-201ENST00000511263 607 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC116917.1-201ENST00000520558 305 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AP003392.2-201ENST00000527269 208 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 DUXAP1-201ENST00000556632 463 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AL117336.2-201ENST00000602435 335 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC087045.1-201ENST00000605856 382 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC007014.2-201ENST00000615581 479 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC104260.1-201ENST00000616660 539 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC048341.3-201ENST00000619323 491 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC005618.4-201ENST00000625053 554 ntBASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC39Q9UFE4 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms