Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 KATNBL1P5-201ENST00000605015 517 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC015849.2-201ENST00000605738 409 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AP001521.2-201ENST00000608772 546 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AL096803.3-201ENST00000609032 532 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC091932.2-201ENST00000623014 291 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 SMG1P7-201ENST00000565246 2704 ntBASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
CCDC3Q9BQI4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC110792.3-201ENST00000595906 1614 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 GSTA12P-201ENST00000402398 508 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 RPL12P9-201ENST00000412942 488 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC119751.6-201ENST00000416712 186 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC007559.1-201ENST00000428736 355 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AL590762.3-201ENST00000436372 640 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AP000949.1-201ENST00000438328 629 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 RPL5P22-201ENST00000480199 884 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AL049874.2-201ENST00000492636 288 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 OR9N1P-202ENST00000494289 481 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 MTND1P36-201ENST00000522384 936 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AP006289.1-201ENST00000538089 277 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 TMF1P1-201ENST00000576058 373 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 PRPF19P1-201ENST00000584766 898 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC008745.1-201ENST00000604064 271 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC004775.1-201ENST00000607389 753 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AL136370.1-201ENST00000608166 691 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC019131.2-201ENST00000609071 870 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AL512506.1-201ENST00000613918 449 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AL122125.1-201ENST00000616999 600 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 MIR7641-1-201ENST00000627518 61 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 SAMMSON-226ENST00000642089 1582 ntBASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC3Q9BQI4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 AC099654.2-201ENST00000433031 1980 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RNA5SP191-201ENST00000362585 102 ntBASIC4.85□□□□□ -1.63
CCDC3Q9BQI4 RNA5SP505-201ENST00000364748 108 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms