Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS13AQ96RL7 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC026427.2-201ENST00000506228 536 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC092709.1-201ENST00000521355 1045 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 RPL12P9-201ENST00000412942 488 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 OR6C71P-201ENST00000432580 913 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AL159987.2-201ENST00000432754 307 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 BX679664.2-201ENST00000439282 283 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AL161729.3-201ENST00000603533 673 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC016588.2-201ENST00000632484 3021 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 OR4A15-201ENST00000314706 1035 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 MIR490-201ENST00000384865 128 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 DYNLL1P4-201ENST00000549314 266 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 AC000095.2-202ENST00000637415 154 ntBASIC4.3□□□□□ -1.72
VPS13AQ96RL7 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS13AQ96RL7 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC073346.2-201ENST00000624724 2058 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 RPS29P2-201ENST00000479278 136 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC005255.1-201ENST00000593748 216 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC024560.2-201ENST00000507981 1497 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 TET1P1-201ENST00000426627 2301 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AL157831.1-201ENST00000426134 473 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AL590399.2-201ENST00000427536 309 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 RPS4XP15-201ENST00000489210 795 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AC021193.1-201ENST00000511607 420 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 MIR5195-201ENST00000583555 115 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 MIMT1-201ENST00000597105 1050 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 AL450472.3-201ENST00000615578 367 ntBASIC4.29□□□□□ -1.72
VPS13AQ96RL7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS13AQ96RL7 RNU1-14P-201ENST00000362759 152 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 RNU1-83P-201ENST00000363426 164 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 PPIAP13-201ENST00000434706 478 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MRPL48P1-201ENST00000445390 636 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 ATP5G1P3-201ENST00000463301 410 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 RNA5SP519-201ENST00000516480 119 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC090136.1-201ENST00000520009 240 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms