Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CHD3Q12873 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.74
CHD3Q12873 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
CHD3Q12873 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.15□□□□□ -1.75
CHD3Q12873 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.15□□□□□ -1.75
CHD3Q12873 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 RNU1-82P-201ENST00000390851 165 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 AC007559.1-201ENST00000428736 355 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.15□□□□□ -1.75
CHD3Q12873 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.15□□□□□ -1.75
CHD3Q12873 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.15□□□□□ -1.75
CHD3Q12873 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.15□□□□□ -1.75
CHD3Q12873 AC010424.2-201ENST00000607594 443 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 MIR6830-201ENST00000636015 70 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 AC104118.1-201ENST00000607625 1589 ntBASIC4.15□□□□□ -1.75
CHD3Q12873 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.15□□□□□ -1.75
CHD3Q12873 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CHD3Q12873 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CHD3Q12873 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CHD3Q12873 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CHD3Q12873 LRRC37BP1-201ENST00000398851 714 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.14□□□□□ -1.75
CHD3Q12873 AL389915.1-201ENST00000422463 466 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 CENPIP1-201ENST00000425713 902 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.14□□□□□ -1.75
CHD3Q12873 TMX2P1-201ENST00000436507 708 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AC034236.1-201ENST00000469891 373 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 RPL7AP10-201ENST00000481016 791 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AC116562.1-201ENST00000485355 781 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.14□□□□□ -1.75
CHD3Q12873 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.14□□□□□ -1.75
CHD3Q12873 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 AC020910.3-201ENST00000603701 874 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 MIR92B-201ENST00000607575 96 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 AC022893.2-201ENST00000564832 3296 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.14□□□□□ -1.75
CHD3Q12873 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.14□□□□□ -1.75
CHD3Q12873 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.14□□□□□ -1.75
CHD3Q12873 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 TLK1P1-201ENST00000456760 2440 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 RNA5SP388-201ENST00000362584 119 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 RNU6-249P-201ENST00000363016 102 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AL357515.1-201ENST00000402967 542 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AC044797.1-201ENST00000445744 679 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.14□□□□□ -1.75
CHD3Q12873 AC093166.2-201ENST00000455969 1017 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AC020890.1-201ENST00000491837 504 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 RFPL4AP5-201ENST00000514977 504 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.14□□□□□ -1.75
CHD3Q12873 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CHD3Q12873 AL121873.1-201ENST00000616013 524 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 AC015871.5-202ENST00000623252 701 ntBASIC4.14□□□□□ -1.75
CHD3Q12873 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CHD3Q12873 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CHD3Q12873 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.13□□□□□ -1.75
CHD3Q12873 SNORA70F-201ENST00000384142 135 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 RN7SKP106-201ENST00000410832 272 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.13□□□□□ -1.75
CHD3Q12873 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CHD3Q12873 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.13□□□□□ -1.75
CHD3Q12873 PPM1AP1-201ENST00000502740 1135 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.13□□□□□ -1.75
CHD3Q12873 AL109766.1-201ENST00000555080 552 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.13□□□□□ -1.75
CHD3Q12873 RN7SL371P-201ENST00000578099 267 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.13□□□□□ -1.75
CHD3Q12873 AC020915.5-201ENST00000596836 964 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.13□□□□□ -1.75
CHD3Q12873 CASC19-206ENST00000641028 1430 ntBASIC4.13□□□□□ -1.75
CHD3Q12873 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.13□□□□□ -1.75
CHD3Q12873 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.13□□□□□ -1.75
CHD3Q12873 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.13□□□□□ -1.75
CHD3Q12873 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CHD3Q12873 THAP12P8-201ENST00000447914 2115 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms