Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC6.45□□□□□ -1.38
MSH6P52701 SNORA5.1-201ENST00000384275 131 ntBASIC6.44□□□□□ -1.38
MSH6P52701 RNA5SP372-201ENST00000390836 115 ntBASIC6.44□□□□□ -1.38
MSH6P52701 EIF4A1P3-201ENST00000411521 244 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC6.44□□□□□ -1.38
MSH6P52701 RPL23AP38-201ENST00000423801 469 ntBASIC6.44□□□□□ -1.38
MSH6P52701 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSH6P52701 AL451139.1-201ENST00000434718 346 ntBASIC6.44□□□□□ -1.38
MSH6P52701 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSH6P52701 SCARNA10-201ENST00000459255 330 ntBASIC6.44□□□□□ -1.38
MSH6P52701 EEF1A1P25-201ENST00000495704 1267 ntBASIC6.44□□□□□ -1.38
MSH6P52701 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 OR5D2P-201ENST00000524390 911 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AP000889.1-201ENST00000530968 660 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 AC018695.5-201ENST00000605872 315 ntBASIC6.44□□□□□ -1.38
MSH6P52701 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC6.44□□□□□ -1.38
MSH6P52701 AP003400.2-201ENST00000624036 666 ntBASIC6.44□□□□□ -1.38
MSH6P52701 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.44□□□□□ -1.38
MSH6P52701 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSH6P52701 SOCS5P3-201ENST00000425115 1576 ntBASIC6.44□□□□□ -1.38
MSH6P52701 TRIM51GP-201ENST00000534741 1350 ntBASIC6.44□□□□□ -1.38
MSH6P52701 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.44□□□□□ -1.38
MSH6P52701 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSH6P52701 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSH6P52701 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 AC090602.1-201ENST00000469695 252 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AC025164.1-201ENST00000496249 478 ntBASIC6.44□□□□□ -1.38
MSH6P52701 NIFKP7-201ENST00000503365 834 ntBASIC6.44□□□□□ -1.38
MSH6P52701 PARP4P3-201ENST00000510265 317 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSH6P52701 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSH6P52701 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC6.44□□□□□ -1.38
MSH6P52701 AP001160.4-201ENST00000596971 382 ntBASIC6.44□□□□□ -1.38
MSH6P52701 AP005432.1-201ENST00000580891 3485 ntBASIC6.43□□□□□ -1.38
MSH6P52701 CARF-203ENST00000414439 2099 ntTSL 2 BASIC6.43□□□□□ -1.38
MSH6P52701 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSH6P52701 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSH6P52701 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSH6P52701 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC6.43□□□□□ -1.38
MSH6P52701 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.43□□□□□ -1.38
MSH6P52701 AC010300.1-201ENST00000600671 5134 ntBASIC6.43□□□□□ -1.38
MSH6P52701 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 PTMAP2-201ENST00000397627 327 ntBASIC6.43□□□□□ -1.38
MSH6P52701 SDHCP2-201ENST00000398565 501 ntBASIC6.43□□□□□ -1.38
MSH6P52701 QRSL1P2-201ENST00000418582 964 ntBASIC6.43□□□□□ -1.38
MSH6P52701 AC091959.2-201ENST00000477363 321 ntBASIC6.43□□□□□ -1.38
MSH6P52701 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.43□□□□□ -1.38
MSH6P52701 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
MSH6P52701 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSH6P52701 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSH6P52701 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6.42□□□□□ -1.38
MSH6P52701 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSH6P52701 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSH6P52701 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSH6P52701 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 ADAM5-202ENST00000399789 1942 ntBASIC6.42□□□□□ -1.38
MSH6P52701 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
MSH6P52701 COX5BP7-201ENST00000414780 274 ntBASIC6.42□□□□□ -1.38
MSH6P52701 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSH6P52701 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.42□□□□□ -1.38
MSH6P52701 HNRNPRP2-201ENST00000528421 743 ntBASIC6.42□□□□□ -1.38
MSH6P52701 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC6.42□□□□□ -1.38
MSH6P52701 MIR4286-201ENST00000580651 93 ntBASIC6.42□□□□□ -1.38
MSH6P52701 AC008739.3-201ENST00000603262 127 ntBASIC6.42□□□□□ -1.38
MSH6P52701 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.42□□□□□ -1.38
MSH6P52701 AP003497.2-201ENST00000624220 967 ntBASIC6.42□□□□□ -1.38
MSH6P52701 TMEM30CP-203ENST00000637814 1035 ntBASIC6.42□□□□□ -1.38
MSH6P52701 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.42□□□□□ -1.38
MSH6P52701 AC092376.2-201ENST00000622621 4116 ntBASIC6.41□□□□□ -1.38
MSH6P52701 NCOA4P2-201ENST00000340589 1813 ntBASIC6.41□□□□□ -1.38
MSH6P52701 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.41□□□□□ -1.38
MSH6P52701 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
MSH6P52701 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 AC063923.1-201ENST00000478982 1619 ntBASIC6.41□□□□□ -1.38
MSH6P52701 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
MSH6P52701 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.41□□□□□ -1.38
MSH6P52701 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
MSH6P52701 RNU1-132P-201ENST00000364300 164 ntBASIC6.41□□□□□ -1.38
MSH6P52701 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 RPL21P67-201ENST00000402896 478 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms