Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC117434.1-201ENST00000419971 836 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 HMGB3P5-201ENST00000428894 612 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.48□□□□□ -1.53
SCN4AP35499 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.48□□□□□ -1.53
SCN4AP35499 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.48□□□□□ -1.53
SCN4AP35499 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.48□□□□□ -1.53
SCN4AP35499 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
SCN4AP35499 AC018628.1-201ENST00000624147 3819 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.48□□□□□ -1.53
SCN4AP35499 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.48□□□□□ -1.53
SCN4AP35499 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 ADAM5-202ENST00000399789 1942 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
SCN4AP35499 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 OR5P1P-201ENST00000299512 925 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AP000580.1-201ENST00000404439 358 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.48□□□□□ -1.53
SCN4AP35499 KATNBL1P2-201ENST00000433311 835 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AC007389.2-201ENST00000434630 306 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AC090142.1-201ENST00000465776 462 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 RPL35P6-201ENST00000490024 372 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 RN7SL691P-201ENST00000494487 301 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AC026726.1-201ENST00000512859 601 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AC092709.1-201ENST00000521355 1045 ntBASIC5.48□□□□□ -1.53
SCN4AP35499 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.48□□□□□ -1.53
SCN4AP35499 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SCN4AP35499 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SCN4AP35499 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SCN4AP35499 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.47□□□□□ -1.53
SCN4AP35499 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 AL158163.1-201ENST00000603915 1649 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 MT-RNR1-201ENST00000389680 954 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 AL139039.2-201ENST00000407436 479 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 RNU6ATAC-201ENST00000408749 126 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.47□□□□□ -1.53
SCN4AP35499 CTSL3P-202ENST00000412179 788 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.47□□□□□ -1.53
SCN4AP35499 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.47□□□□□ -1.53
SCN4AP35499 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.47□□□□□ -1.53
SCN4AP35499 AL049874.2-201ENST00000492636 288 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.47□□□□□ -1.53
SCN4AP35499 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SCN4AP35499 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.47□□□□□ -1.53
SCN4AP35499 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SCN4AP35499 AP000889.1-201ENST00000530968 660 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.47□□□□□ -1.53
SCN4AP35499 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
SCN4AP35499 MIR3653-201ENST00000625572 110 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 AC006453.5-201ENST00000636451 619 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 AL139254.3-201ENST00000641097 674 ntBASIC5.47□□□□□ -1.53
SCN4AP35499 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SCN4AP35499 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.47□□□□□ -1.53
SCN4AP35499 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.47□□□□□ -1.53
SCN4AP35499 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SCN4AP35499 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
SCN4AP35499 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SCN4AP35499 PTMAP2-201ENST00000397627 327 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.46□□□□□ -1.53
SCN4AP35499 AL358178.1-201ENST00000407698 397 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.46□□□□□ -1.53
SCN4AP35499 YY1P1-201ENST00000427625 668 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.46□□□□□ -1.53
SCN4AP35499 AL133547.1-201ENST00000448546 220 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 DHFRP3-201ENST00000455595 559 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SCN4AP35499 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
SCN4AP35499 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SCN4AP35499 AL133372.1-201ENST00000493565 745 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.46□□□□□ -1.53
SCN4AP35499 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.46□□□□□ -1.53
SCN4AP35499 AP001804.2-201ENST00000533932 910 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.46□□□□□ -1.53
SCN4AP35499 AC006116.5-201ENST00000591936 559 ntBASIC5.46□□□□□ -1.53
SCN4AP35499 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SCN4AP35499 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.46□□□□□ -1.54
SCN4AP35499 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 AC097374.1-203ENST00000400783 485 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SCN4AP35499 AC021660.1-201ENST00000465006 554 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 AL132838.2-201ENST00000492041 314 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms