Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTCO3P23-201ENST00000561363 289 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.31□□□□□ -1.4
COL8A1P27658 MIR4443-201ENST00000585052 53 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 AL451049.1-201ENST00000608672 497 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC069499.2-201ENST00000610665 382 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC089999.3-201ENST00000622440 577 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC068213.1-201ENST00000625124 226 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 SRP54-214ENST00000630962 162 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 AC073488.8-201ENST00000631952 757 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 AC111152.1-202ENST00000635848 339 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 AP003486.1-201ENST00000525716 3994 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 MTND5P10-201ENST00000603719 1809 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 OR4G1P-203ENST00000641984 1631 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL8A1P27658 MAPK10-347ENST00000641762 2856 ntBASIC6.31□□□□□ -1.4
COL8A1P27658 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL8A1P27658 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC6.31□□□□□ -1.4
COL8A1P27658 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 ZNF807-201ENST00000328088 1707 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 TPD52-213ENST00000520527 2638 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 MYO6-207ENST00000615563 4026 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 NF1P8-201ENST00000415351 1461 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AC012618.3-205ENST00000637896 1496 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 AC022150.4-201ENST00000598322 2848 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AKAP7-202ENST00000342266 2461 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL8A1P27658 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL8A1P27658 RNU6-1120P-201ENST00000362988 108 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 RNA5SP85-201ENST00000365378 119 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 SUMO2P13-201ENST00000403109 272 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 RNA5SP431-201ENST00000410312 120 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 RNU4-14P-201ENST00000410858 122 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC6.3□□□□□ -1.4
COL8A1P27658 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.3□□□□□ -1.4
COL8A1P27658 AL953862.1-201ENST00000423016 168 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 AL160004.2-201ENST00000432935 350 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC005040.1-201ENST00000437783 482 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.3□□□□□ -1.4
COL8A1P27658 TXNP1-201ENST00000441872 371 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.3□□□□□ -1.4
COL8A1P27658 AL035666.1-201ENST00000446195 348 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.3□□□□□ -1.4
COL8A1P27658 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC092570.2-201ENST00000452117 1143 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC110794.1-201ENST00000505816 425 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 SCARNA21.2-201ENST00000516600 166 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AP005902.2-201ENST00000518393 307 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 SERPINA15P-201ENST00000529287 266 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC009117.1-201ENST00000563948 554 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 MIR3910-1-201ENST00000580936 111 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 MIR6721-201ENST00000617181 87 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.3□□□□□ -1.4
COL8A1P27658 CASC19-232ENST00000641480 1244 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms