Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNORA43.3-201ENST00000517240 103 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGB1P09429 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGB1P09429 AC087894.1-201ENST00000538359 518 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGB1P09429 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGB1P09429 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGB1P09429 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGB1P09429 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGB1P09429 AC100767.2-201ENST00000604840 693 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 AC007786.3-201ENST00000615154 596 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 AP005431.1-201ENST00000618479 319 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.59□□□□□ -1.35
HMGB1P09429 MIR1910-201ENST00000636955 80 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 FAM157B-203ENST00000639350 358 ntBASIC6.59□□□□□ -1.35
HMGB1P09429 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGB1P09429 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGB1P09429 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGB1P09429 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGB1P09429 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGB1P09429 AC018809.2-201ENST00000602436 3823 ntBASIC6.59□□□□□ -1.36
HMGB1P09429 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
HMGB1P09429 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 AC079097.1-201ENST00000512187 1399 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 MIR551A-201ENST00000385042 96 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 ATP5F1P2-201ENST00000398143 760 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 OR4F13P-201ENST00000428478 931 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 RPL36P19-201ENST00000430744 301 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 AC234064.1-201ENST00000436312 247 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 RAB11AP1-201ENST00000442978 646 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 CEACAMP6-201ENST00000452007 574 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 AC113430.1-201ENST00000506872 718 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 NRBF2P4-201ENST00000520874 850 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 AC006518.2-201ENST00000542513 940 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 EIF5A2P1-201ENST00000564027 460 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB1P09429 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
HMGB1P09429 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC6.58□□□□□ -1.36
HMGB1P09429 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 MIR6133-201ENST00000617057 108 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 LINC00901.1-201ENST00000617252 152 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 uc_338.7-201ENST00000621834 124 ntBASIC6.58□□□□□ -1.36
HMGB1P09429 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
HMGB1P09429 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB1P09429 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB1P09429 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB1P09429 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 RNA5SP46-201ENST00000362370 120 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HMGB1P09429 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGB1P09429 OR6E1P-201ENST00000414424 923 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
HMGB1P09429 AL662874.1-201ENST00000426065 230 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AC013262.1-201ENST00000426710 252 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AC000041.1-201ENST00000439655 175 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AL359265.1-201ENST00000440296 795 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AC073465.2-201ENST00000440938 498 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 NAP1L1P3-201ENST00000462291 880 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AC084754.1-201ENST00000463466 464 ntBASIC6.57□□□□□ -1.36
HMGB1P09429 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB1P09429 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGB1P09429 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB1P09429 AC021106.1-201ENST00000509020 1058 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms