Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC138832.1-201ENST00000522871 556 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 NMNAT1P1-201ENST00000554095 876 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 OR11H3P-201ENST00000554547 982 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 MIR4284-201ENST00000578924 81 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 MEMO1P5-201ENST00000604810 406 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC135068.5-201ENST00000624197 983 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AL451142.2-201ENST00000429076 2090 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.99□□□□□ -1.61
PCDHGA1Q9Y5H4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AP001029.2-203ENST00000589795 4910 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RNU6-304P-201ENST00000364855 107 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC007559.1-201ENST00000428736 355 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC016712.1-201ENST00000431088 378 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RPS26P4-201ENST00000431743 355 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC138761.5-201ENST00000433967 325 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 ARL4AP4-201ENST00000434170 518 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RHOT1P3-201ENST00000436571 331 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MED28P3-201ENST00000444288 531 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 OR52J1P-201ENST00000450596 932 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RN7SL197P-201ENST00000466981 299 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 CDH12P2-201ENST00000504393 298 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 GAPDHP56-201ENST00000506031 988 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MTND2P31-201ENST00000512602 616 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC006427.1-201ENST00000514359 712 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MIR3667-201ENST00000581025 74 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC009237.13-201ENST00000603193 276 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC123786.2-201ENST00000603459 275 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AL391358.1-201ENST00000605342 190 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC116447.1-201ENST00000613153 453 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC011472.4-201ENST00000615848 491 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 AC090017.1-201ENST00000548612 1779 ntBASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PCDHGA1Q9Y5H4 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 AC002525.1-201ENST00000624392 1622 ntBASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 SNORA66-201ENST00000384792 133 ntBASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
PCDHGA1Q9Y5H4 AC093719.1-202ENST00000392735 373 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms