Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL022394.1-201ENST00000606979 292 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC093838.1-201ENST00000613014 469 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 HTR1DP1-201ENST00000616500 888 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 U4.5-201ENST00000617137 123 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AL161756.3-201ENST00000641216 2071 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC005224.3-201ENST00000584683 2140 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC239868.2-201ENST00000564237 4527 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 FAM3C2-201ENST00000312214 681 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 RNA5SP375-201ENST00000362975 119 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 MIR188-201ENST00000385034 86 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 PEX12P1-201ENST00000400284 1048 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC017078.1-201ENST00000416146 368 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 RPL7AP51-201ENST00000422016 760 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC099782.1-201ENST00000425889 474 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ISCA1P1-201ENST00000426679 387 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 NPM1P18-201ENST00000434232 732 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AL162739.1-201ENST00000450606 307 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 TPMTP4-201ENST00000450749 678 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 TPT1P7-201ENST00000458300 517 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 RPS26P24-201ENST00000497656 331 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 SNORA70.11-201ENST00000515987 138 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 SNORA70.13-201ENST00000516116 138 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 Vault.2-201ENST00000516519 98 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC036111.2-201ENST00000533247 901 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 OR6C7P-201ENST00000547875 934 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 U73023.1-201ENST00000603134 700 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 IMMP1LP1-201ENST00000605170 488 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC009994.1-201ENST00000606889 253 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AC090517.2-201ENST00000614966 680 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 AL137141.1-201ENST00000624622 4836 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 GTF2IP4-201ENST00000453092 2054 ntBASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC39Q9UFE4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RNU6-692P-201ENST00000384496 107 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RNA5SP198-201ENST00000410376 127 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AL158825.1-201ENST00000414735 521 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 HIGD1AP12-201ENST00000427832 281 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 LARP1BP3-201ENST00000437229 869 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC124945.1-201ENST00000485133 188 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RPL29P23-201ENST00000486188 442 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 RPL23AP40-201ENST00000487630 390 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC015864.1-201ENST00000496512 544 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC108941.1-201ENST00000502853 530 ntBASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC39Q9UFE4 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms