Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 OR52B5P-201ENST00000435337 951 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC002542.1-201ENST00000440683 193 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC005002.1-201ENST00000447458 540 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL596266.1-201ENST00000448132 400 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 SBDSP1-204ENST00000453858 737 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC010468.1-201ENST00000461022 817 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC012123.2-201ENST00000485809 248 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 RPS3AP22-201ENST00000488297 769 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC021193.1-201ENST00000511607 420 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 RNU5A-4P-201ENST00000516588 111 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AP000926.4-201ENST00000527351 454 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 PMS2P3-207ENST00000529061 717 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC125611.1-201ENST00000549563 229 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL354943.1-201ENST00000572103 781 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL133507.1-201ENST00000605269 557 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AP000255.1-201ENST00000610276 676 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AL162574.1-201ENST00000615702 950 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 MIR7155-201ENST00000615925 56 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC131159.1-201ENST00000621854 213 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 U6.107-201ENST00000637108 79 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 MIR3974-201ENST00000637126 96 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 MIR1322-201ENST00000638013 71 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 OR52B5P-202ENST00000641118 1110 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 ZNF663P-202ENST00000641770 1131 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC005261.4-201ENST00000600047 1385 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 AC083837.1-201ENST00000565297 2994 ntBASIC5.74□□□□□ -1.49
TDP1Q9NUW8 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.74□□□□□ -1.49
TDP1Q9NUW8 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC239868.2-201ENST00000564237 4527 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 SNORA70.9-201ENST00000384370 135 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 SNORA40.2-201ENST00000390847 128 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 RPF2P1-201ENST00000424137 906 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 UBE2V1P1-201ENST00000430836 445 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 TMEM183AP1-205ENST00000432739 290 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 CLUHP1-201ENST00000435012 1190 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL117351.1-201ENST00000438864 766 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 FGF7P5-201ENST00000441829 291 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC104108.1-201ENST00000509930 412 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 MIR548Y-201ENST00000582739 110 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 H3F3BP2-201ENST00000583907 357 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL109653.1-201ENST00000603091 248 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AP003392.5-201ENST00000607857 415 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AL121612.2-201ENST00000612261 482 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 CASC19-222ENST00000641321 1173 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms