Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC002525.1-201ENST00000624392 1622 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AP000756.2-201ENST00000624168 2567 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RPL32P3-201ENST00000359025 275 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RNU4-44P-201ENST00000363050 141 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 SNORA2.3-201ENST00000383920 135 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RN7SKP222-201ENST00000410651 315 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RPL6P29-201ENST00000414863 865 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC079809.1-201ENST00000415468 276 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RFESDP1-201ENST00000422350 461 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 BX323845.1-201ENST00000432417 179 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 OR7E125P-201ENST00000443450 846 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 IGHV5-78-201ENST00000450948 295 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AL513533.1-201ENST00000453728 415 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 PSMC1P13-201ENST00000458195 985 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC021146.7-201ENST00000509604 775 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC108471.1-201ENST00000513977 287 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC092709.1-201ENST00000521355 1045 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 PARP1P2-201ENST00000556806 195 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC209154.1-201ENST00000582156 337 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC019193.2-201ENST00000610012 634 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC015908.5-201ENST00000623289 343 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 RPL23AP61-201ENST00000623642 466 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 HSPD1P11-201ENST00000508643 1702 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 Z95331.1-201ENST00000623075 23112 ntBASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HDDC3Q8N4P3 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC079741.1-201ENST00000321498 212 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 BMS1P3-201ENST00000372011 932 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL021331.1-201ENST00000402817 582 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL390316.1-201ENST00000406279 553 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL512430.2-201ENST00000406786 339 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL691447.1-201ENST00000419456 387 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 HMGN2P27-201ENST00000427352 270 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL353898.1-201ENST00000444055 238 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC012512.1-201ENST00000446594 718 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AL157385.1-201ENST00000446973 268 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 PTMAP3-201ENST00000447474 330 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 TCEA1P1-201ENST00000449716 880 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 OR52J1P-201ENST00000450596 932 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 RPL7AP52-201ENST00000458096 790 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC091180.1-201ENST00000462104 372 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 RPS23P7-201ENST00000466210 444 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 IGLV2-34-201ENST00000490007 283 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC093720.1-201ENST00000505681 714 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 FTH1P11-201ENST00000517577 551 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 IGKV1-32-201ENST00000519290 311 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC138832.1-201ENST00000522871 556 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.07□□□□□ -1.6
HDDC3Q8N4P3 MIR6758-201ENST00000620653 63 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms