Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA1P55317 LINC00622-201ENST00000562811 1570 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 AC108467.2-201ENST00000617640 1597 ntBASIC4.36□□□□□ -1.71
FOXA1P55317 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.35□□□□□ -1.71
FOXA1P55317 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC021242.1-201ENST00000507315 2035 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC067945.1-201ENST00000342609 618 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 MIR105-2-201ENST00000385083 81 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 GAPDHP15-201ENST00000398586 975 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 VN1R8P-201ENST00000407739 893 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 AL445213.1-201ENST00000412589 747 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
FOXA1P55317 RPL23AP25-201ENST00000430973 463 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 PA2G4P6-201ENST00000438325 1197 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 NPM1P33-201ENST00000438918 872 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 YWHAZP2-201ENST00000440317 728 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 STMN1P2-201ENST00000508435 439 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC008694.2-201ENST00000517591 306 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 OR1F2P-201ENST00000570470 933 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 DPRXP4-201ENST00000578053 568 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.35□□□□□ -1.71
FOXA1P55317 MIR4737-201ENST00000583979 81 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.35□□□□□ -1.71
FOXA1P55317 AL021707.7-201ENST00000607991 416 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 MIR7154-201ENST00000620673 73 ntBASIC4.35□□□□□ -1.71
FOXA1P55317 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.35□□□□□ -1.71
FOXA1P55317 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXA1P55317 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXA1P55317 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
FOXA1P55317 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
FOXA1P55317 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
FOXA1P55317 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXA1P55317 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXA1P55317 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXA1P55317 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
FOXA1P55317 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
FOXA1P55317 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
FOXA1P55317 AL645927.1-201ENST00000396783 406 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 SEPT7P2-202ENST00000398921 823 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AL078604.1-201ENST00000404609 466 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 RPS26P13-201ENST00000419030 330 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AC062016.2-201ENST00000420950 676 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 CENPIP1-201ENST00000425713 902 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 SKP1P3-201ENST00000429280 487 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AC008072.1-201ENST00000434254 824 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.34□□□□□ -1.71
FOXA1P55317 MAPRE1P3-201ENST00000435438 796 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AL627308.1-201ENST00000435693 821 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AC092905.1-201ENST00000467527 949 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AC008410.1-201ENST00000483777 339 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 IGLV2-34-201ENST00000490007 283 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.34□□□□□ -1.71
FOXA1P55317 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.34□□□□□ -1.71
FOXA1P55317 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.34□□□□□ -1.71
FOXA1P55317 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.34□□□□□ -1.71
FOXA1P55317 EDDM3DP-201ENST00000554692 434 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.34□□□□□ -1.71
FOXA1P55317 UBE2FP2-201ENST00000566646 462 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.34□□□□□ -1.71
FOXA1P55317 AC211433.2-201ENST00000608433 387 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 AL138721.1-201ENST00000616756 179 ntBASIC4.34□□□□□ -1.71
FOXA1P55317 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.34□□□□□ -1.71
FOXA1P55317 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXA1P55317 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
FOXA1P55317 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
FOXA1P55317 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
FOXA1P55317 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
FOXA1P55317 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
FOXA1P55317 OR14L1P-202ENST00000641545 3009 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 MTND5P12-201ENST00000502851 1449 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA1P55317 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
FOXA1P55317 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
FOXA1P55317 RNA5SP307-201ENST00000362863 116 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
FOXA1P55317 OR1F12-201ENST00000402365 945 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AL139039.2-201ENST00000407436 479 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA1P55317 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA1P55317 NPM1P22-201ENST00000427761 952 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 AP001324.1-201ENST00000428553 399 ntBASIC4.33□□□□□ -1.72
FOXA1P55317 PTMAP6-201ENST00000439110 327 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms