Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.9□□□□□ -1.62
COL4A4P53420 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC4.9□□□□□ -1.62
COL4A4P53420 AL161756.2-201ENST00000604597 246 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 AL356863.1-201ENST00000623378 1080 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.9□□□□□ -1.62
COL4A4P53420 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.9□□□□□ -1.62
COL4A4P53420 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 DDX18P5-201ENST00000534547 1306 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL4A4P53420 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL4A4P53420 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL4A4P53420 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.9□□□□□ -1.63
COL4A4P53420 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.9□□□□□ -1.63
COL4A4P53420 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL4A4P53420 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC4.9□□□□□ -1.63
COL4A4P53420 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.9□□□□□ -1.63
COL4A4P53420 AC021146.4-201ENST00000309229 279 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 EIF4A1P1-201ENST00000420241 934 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC069157.1-201ENST00000421749 137 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.89□□□□□ -1.63
COL4A4P53420 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.89□□□□□ -1.63
COL4A4P53420 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.89□□□□□ -1.63
COL4A4P53420 RPL21P89-201ENST00000444021 467 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC023632.4-201ENST00000517783 191 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.89□□□□□ -1.63
COL4A4P53420 AC002069.2-201ENST00000603580 883 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.89□□□□□ -1.63
COL4A4P53420 AC039056.2-201ENST00000622261 511 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC004777.1-201ENST00000624317 287 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC140479.6-201ENST00000633535 357 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.89□□□□□ -1.63
COL4A4P53420 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.89□□□□□ -1.63
COL4A4P53420 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
COL4A4P53420 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.89□□□□□ -1.63
COL4A4P53420 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
COL4A4P53420 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 AC000374.1-201ENST00000434698 1745 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
COL4A4P53420 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 UBBP2-201ENST00000376781 231 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 MIR670-201ENST00000390142 98 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 RPS27AP11-201ENST00000402798 447 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 OR13Z1P-201ENST00000416141 834 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 COX6CP15-201ENST00000426313 211 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL4A4P53420 TPT1P3-201ENST00000492841 512 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.89□□□□□ -1.63
COL4A4P53420 MIR4444-1-201ENST00000581696 74 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 MIR4444-2-201ENST00000584390 74 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.89□□□□□ -1.63
COL4A4P53420 AC020634.1-201ENST00000608701 549 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 AC005858.4-201ENST00000623191 700 ntBASIC4.89□□□□□ -1.63
COL4A4P53420 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.88□□□□□ -1.63
COL4A4P53420 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC006326.1-201ENST00000445465 787 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 SCARNA10-201ENST00000459255 330 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 DSTNP2-201ENST00000504533 515 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC130352.1-201ENST00000602979 661 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 AC015804.1-201ENST00000622935 435 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC097461.1-201ENST00000568928 2821 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.88□□□□□ -1.63
COL4A4P53420 AC083837.1-201ENST00000565297 2994 ntBASIC4.88□□□□□ -1.63
COL4A4P53420 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL4A4P53420 AL445487.1-201ENST00000415694 1580 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL4A4P53420 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
COL4A4P53420 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 RNU6-628P-201ENST00000410675 107 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 RCC2P2-201ENST00000422174 918 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL4A4P53420 RPL21P43-201ENST00000425440 472 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 OR2AH1P-201ENST00000425717 928 ntBASIC4.87□□□□□ -1.63
COL4A4P53420 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.87□□□□□ -1.63
COL4A4P53420 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms