Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU5A-7P-201ENST00000515979 116 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 SMARCE1P4-201ENST00000523647 241 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.4□□□□□ -1.71
CDX1P47902 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 AC006349.1-201ENST00000555526 235 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC007225.2-201ENST00000562529 256 ntBASIC4.4□□□□□ -1.71
CDX1P47902 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CDX1P47902 AC015720.2-201ENST00000567709 334 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC104072.1-201ENST00000568817 668 ntBASIC4.4□□□□□ -1.71
CDX1P47902 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CDX1P47902 MIR1273E-201ENST00000581165 102 ntBASIC4.4□□□□□ -1.71
CDX1P47902 PRPF19P1-201ENST00000584766 898 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AC115085.1-201ENST00000588924 229 ntBASIC4.4□□□□□ -1.71
CDX1P47902 DNAJC19P3-201ENST00000594491 331 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.4□□□□□ -1.71
CDX1P47902 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.4□□□□□ -1.71
CDX1P47902 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.4□□□□□ -1.71
CDX1P47902 AL136370.1-201ENST00000608166 691 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC021851.1-201ENST00000608537 1082 ntBASIC4.4□□□□□ -1.71
CDX1P47902 OR2BH1P-201ENST00000608850 864 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AP000894.4-201ENST00000610185 483 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC109309.2-201ENST00000612597 332 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AC078880.5-201ENST00000617845 421 ntBASIC4.4□□□□□ -1.71
CDX1P47902 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC024595.1-201ENST00000623088 387 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC015908.5-201ENST00000623289 343 ntBASIC4.4□□□□□ -1.71
CDX1P47902 CR392039.4-201ENST00000624968 501 ntBASIC4.4□□□□□ -1.71
CDX1P47902 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.4□□□□□ -1.71
CDX1P47902 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.4□□□□□ -1.71
CDX1P47902 HSPA8P19-201ENST00000505359 1517 ntBASIC4.4□□□□□ -1.71
CDX1P47902 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CDX1P47902 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CDX1P47902 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.4□□□□□ -1.71
CDX1P47902 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CDX1P47902 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 AC006206.1-201ENST00000544842 3387 ntBASIC4.39□□□□□ -1.71
CDX1P47902 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 LINC01355-201ENST00000566551 5444 ntBASIC4.39□□□□□ -1.71
CDX1P47902 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 SEC63P2-201ENST00000503863 1939 ntBASIC4.39□□□□□ -1.71
CDX1P47902 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 OR4K17-201ENST00000315543 1032 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RNA5SP132-201ENST00000364725 118 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RN7SKP124-201ENST00000364730 341 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RNU4-2-201ENST00000365668 141 ntBASIC4.39□□□□□ -1.71
CDX1P47902 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 OR52E6-202ENST00000379946 954 ntBASIC4.39□□□□□ -1.71
CDX1P47902 MIR130A-201ENST00000385274 89 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RNA5SP91-201ENST00000390902 119 ntBASIC4.39□□□□□ -1.71
CDX1P47902 U3.25-201ENST00000391209 220 ntBASIC4.39□□□□□ -1.71
CDX1P47902 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 EIF4A1P1-201ENST00000420241 934 ntBASIC4.39□□□□□ -1.71
CDX1P47902 AC104333.2-201ENST00000422630 192 ntBASIC4.39□□□□□ -1.71
CDX1P47902 DEFB130D-201ENST00000426866 237 ntBASIC4.39□□□□□ -1.71
CDX1P47902 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 FMO7P-201ENST00000436045 768 ntBASIC4.39□□□□□ -1.71
CDX1P47902 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 AL031584.1-201ENST00000447169 754 ntBASIC4.39□□□□□ -1.71
CDX1P47902 MTND6P6-201ENST00000478031 263 ntBASIC4.39□□□□□ -1.71
CDX1P47902 NAMPTP2-201ENST00000505629 1115 ntBASIC4.39□□□□□ -1.71
CDX1P47902 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 ATP5LP3-201ENST00000514223 304 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RN7SKP46-201ENST00000515942 234 ntBASIC4.39□□□□□ -1.71
CDX1P47902 RNA5SP360-201ENST00000516555 118 ntBASIC4.39□□□□□ -1.71
CDX1P47902 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 AC068339.2-201ENST00000534395 618 ntBASIC4.39□□□□□ -1.71
CDX1P47902 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.39□□□□□ -1.71
CDX1P47902 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.39□□□□□ -1.71
CDX1P47902 STMN1P1-201ENST00000617809 440 ntBASIC4.39□□□□□ -1.71
CDX1P47902 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 ATE1-AS1-202ENST00000636460 506 ntBASIC4.39□□□□□ -1.71
CDX1P47902 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CDX1P47902 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.39□□□□□ -1.71
CDX1P47902 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.39□□□□□ -1.71
CDX1P47902 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms