Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 AL590763.1-201ENST00000398297 1545 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PTPN9P43378 RN7SKP114-201ENST00000410327 279 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 RNU6-584P-201ENST00000410350 95 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 RN7SKP229-201ENST00000410465 302 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 UBE2V1P11-201ENST00000411559 285 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC002524.1-201ENST00000411687 547 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 UBE2V1P9-201ENST00000414760 368 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 DDX39BP1-205ENST00000422507 192 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC115285.1-201ENST00000424879 736 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AL139148.1-201ENST00000427122 680 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.33□□□□□ -1.56
PTPN9P43378 CYCSP24-201ENST00000445119 316 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 HMGB1P26-201ENST00000452520 628 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC091180.1-201ENST00000462104 372 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC097484.1-201ENST00000471148 389 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 TPT1P3-201ENST00000492841 512 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC025459.1-201ENST00000504072 156 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC084759.1-201ENST00000561168 290 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 AC008507.2-201ENST00000588402 1176 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC025175.1-201ENST00000606482 759 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AL139407.1-201ENST00000613826 1175 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 MIR6826-201ENST00000617808 98 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 AC015660.5-201ENST00000623238 564 ntBASIC5.33□□□□□ -1.56
PTPN9P43378 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.33□□□□□ -1.56
PTPN9P43378 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
PTPN9P43378 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTPN9P43378 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.33□□□□□ -1.56
PTPN9P43378 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.33□□□□□ -1.56
PTPN9P43378 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC073136.1-201ENST00000449426 2884 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
PTPN9P43378 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 U3.36-201ENST00000408418 213 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC106883.1-201ENST00000418805 562 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AL355433.1-201ENST00000422804 300 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC005033.1-201ENST00000428904 813 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 ARAFP2-201ENST00000440565 559 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC004980.3-201ENST00000447046 365 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AC092647.2-201ENST00000452998 253 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.32□□□□□ -1.56
PTPN9P43378 AC023424.1-201ENST00000496058 459 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.32□□□□□ -1.56
PTPN9P43378 ENPP7P11-201ENST00000505915 627 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AC010460.2-201ENST00000509054 677 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.32□□□□□ -1.56
PTPN9P43378 RNU6-513P-201ENST00000516104 104 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 RN7SKP141-201ENST00000516167 338 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
PTPN9P43378 AC022832.1-201ENST00000530718 645 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 AP000916.1-201ENST00000533869 835 ntBASIC5.32□□□□□ -1.56
PTPN9P43378 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.32□□□□□ -1.56
PTPN9P43378 OR11J2P-201ENST00000555298 907 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 2197.4 ms