Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 AC245047.2-201ENST00000441060 530 ntBASIC5□□□□□ -1.61
HNF4AP41235 AURKAPS1-201ENST00000451805 1212 ntBASIC5□□□□□ -1.61
HNF4AP41235 RNA5SP103-201ENST00000459503 118 ntBASIC5□□□□□ -1.61
HNF4AP41235 RPS18P6-201ENST00000476880 458 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 NIP7P2-201ENST00000485801 544 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 MTCO1P31-201ENST00000506355 492 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5□□□□□ -1.61
HNF4AP41235 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 MIR3176-201ENST00000582210 90 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 VN1R84P-201ENST00000593697 235 ntBASIC5□□□□□ -1.61
HNF4AP41235 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5□□□□□ -1.61
HNF4AP41235 CR589904.2-201ENST00000612533 440 ntBASIC5□□□□□ -1.61
HNF4AP41235 AL512624.1-201ENST00000613638 469 ntBASIC5□□□□□ -1.61
HNF4AP41235 AP004607.9-201ENST00000618202 316 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC090527.3-201ENST00000619041 548 ntBASIC5□□□□□ -1.61
HNF4AP41235 AC015726.3-201ENST00000624501 418 ntBASIC5□□□□□ -1.61
HNF4AP41235 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5□□□□□ -1.61
HNF4AP41235 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5□□□□□ -1.61
HNF4AP41235 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5□□□□□ -1.61
HNF4AP41235 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5□□□□□ -1.61
HNF4AP41235 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HNF4AP41235 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
HNF4AP41235 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HNF4AP41235 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HNF4AP41235 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HNF4AP41235 CCNB2P1-201ENST00000399411 1150 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 RNU4-74P-201ENST00000411280 161 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 NANOGP4-201ENST00000427230 913 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 MTND4LP14-201ENST00000429447 288 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 PPIAP13-201ENST00000434706 478 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 CBX1P4-201ENST00000439415 457 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AC009127.1-201ENST00000467090 155 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AC010683.1-201ENST00000473673 378 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 OR9N1P-202ENST00000494289 481 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.99□□□□□ -1.61
HNF4AP41235 SNORD116-26-201ENST00000516006 96 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.99□□□□□ -1.61
HNF4AP41235 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.99□□□□□ -1.61
HNF4AP41235 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.99□□□□□ -1.61
HNF4AP41235 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.99□□□□□ -1.61
HNF4AP41235 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 AC092953.2-201ENST00000608000 699 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AC092574.1-201ENST00000609771 420 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AC108359.1-201ENST00000616451 1211 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 AL162233.1-201ENST00000620014 944 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 AC000374.1-201ENST00000434698 1745 ntBASIC4.99□□□□□ -1.61
HNF4AP41235 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HNF4AP41235 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HNF4AP41235 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms