Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 SCARNA15-201ENST00000607520 4325 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL5A3P25940 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 AL035696.2-201ENST00000407941 709 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.6□□□□□ -1.51
COL5A3P25940 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.6□□□□□ -1.51
COL5A3P25940 RNA5SP246-201ENST00000458909 119 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AC079804.1-201ENST00000461922 436 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 RN7SL132P-201ENST00000478131 296 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 VN1R105P-201ENST00000486595 910 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AC097486.1-201ENST00000515331 210 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 RNA5SP49-201ENST00000516450 115 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 DPPA3P2-201ENST00000553589 478 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.6□□□□□ -1.51
COL5A3P25940 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 FRG1EP-201ENST00000634469 770 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AC093297.3-201ENST00000607056 2517 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
COL5A3P25940 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.59□□□□□ -1.51
COL5A3P25940 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL5A3P25940 RNU1-14P-201ENST00000362759 152 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 MIR554-201ENST00000384874 96 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 RPS21P8-201ENST00000413365 247 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL5A3P25940 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 COX6B1P7-201ENST00000430845 235 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 RPEP2-201ENST00000432149 701 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.59□□□□□ -1.51
COL5A3P25940 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 HNRNPCP4-201ENST00000571636 900 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 AC053481.3-201ENST00000577881 843 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 AC127024.5-201ENST00000580085 462 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 AC008013.2-202ENST00000637965 364 ntBASIC5.59□□□□□ -1.51
COL5A3P25940 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL5A3P25940 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL5A3P25940 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL5A3P25940 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.59□□□□□ -1.52
COL5A3P25940 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A3P25940 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A3P25940 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 AC139769.1-204ENST00000472297 1931 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 AC027228.2-201ENST00000567141 2154 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 MT-RNR1-201ENST00000389680 954 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL5A3P25940 EI24P3-201ENST00000399046 1062 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A3P25940 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A3P25940 AC012671.1-201ENST00000451912 203 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 AC090686.1-201ENST00000481577 749 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
COL5A3P25940 FTH1P21-201ENST00000512179 511 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 RNA5SP519-201ENST00000516480 119 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A3P25940 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 FAM27D1-201ENST00000612308 341 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 RNA5SP439-201ENST00000617595 124 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A3P25940 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
COL5A3P25940 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
COL5A3P25940 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A3P25940 AC017104.4-201ENST00000636283 1592 ntBASIC5.58□□□□□ -1.52
COL5A3P25940 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL5A3P25940 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL5A3P25940 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A3P25940 RNU6-628P-201ENST00000410675 107 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 AL590806.1-201ENST00000415818 853 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.57□□□□□ -1.52
COL5A3P25940 RPS29P7-201ENST00000439662 171 ntBASIC5.57□□□□□ -1.52
COL5A3P25940 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.57□□□□□ -1.52
COL5A3P25940 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.57□□□□□ -1.52
COL5A3P25940 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
COL5A3P25940 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms