Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 AC092747.4-201ENST00000620519 1861 ntBASIC5.59□□□□□ -1.51
BDNFP23560 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BDNFP23560 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
BDNFP23560 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
BDNFP23560 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.59□□□□□ -1.52
BDNFP23560 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
BDNFP23560 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
BDNFP23560 ADAM24P-201ENST00000398655 2101 ntBASIC5.59□□□□□ -1.52
BDNFP23560 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 SNORA17.1-201ENST00000362945 126 ntBASIC5.58□□□□□ -1.52
BDNFP23560 RNA5SP507-201ENST00000363603 121 ntBASIC5.58□□□□□ -1.52
BDNFP23560 MIR765-201ENST00000390226 114 ntBASIC5.58□□□□□ -1.52
BDNFP23560 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
BDNFP23560 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
BDNFP23560 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
BDNFP23560 RN7SKP126-201ENST00000411143 300 ntBASIC5.58□□□□□ -1.52
BDNFP23560 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 MTCYBP21-201ENST00000443300 1113 ntBASIC5.58□□□□□ -1.52
BDNFP23560 AL162388.1-201ENST00000450912 352 ntBASIC5.58□□□□□ -1.52
BDNFP23560 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 RN7SL197P-201ENST00000466981 299 ntBASIC5.58□□□□□ -1.52
BDNFP23560 BX284632.1-201ENST00000478218 541 ntBASIC5.58□□□□□ -1.52
BDNFP23560 RPSAP50-201ENST00000481955 852 ntBASIC5.58□□□□□ -1.52
BDNFP23560 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 SNORA76.2-201ENST00000517095 137 ntBASIC5.58□□□□□ -1.52
BDNFP23560 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 AC090751.1-201ENST00000566966 267 ntBASIC5.58□□□□□ -1.52
BDNFP23560 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.58□□□□□ -1.52
BDNFP23560 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 FRG1DP-201ENST00000635586 771 ntBASIC5.58□□□□□ -1.52
BDNFP23560 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.58□□□□□ -1.52
BDNFP23560 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
BDNFP23560 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
BDNFP23560 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BDNFP23560 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.57□□□□□ -1.52
BDNFP23560 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 SNORA70.6-201ENST00000383934 134 ntBASIC5.57□□□□□ -1.52
BDNFP23560 RNU6-98P-201ENST00000384173 107 ntBASIC5.57□□□□□ -1.52
BDNFP23560 RNU1-106P-201ENST00000384382 164 ntBASIC5.57□□□□□ -1.52
BDNFP23560 MIR600-201ENST00000385007 98 ntBASIC5.57□□□□□ -1.52
BDNFP23560 RPL23AP27-201ENST00000415161 451 ntBASIC5.57□□□□□ -1.52
BDNFP23560 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 AL354766.1-201ENST00000423396 542 ntBASIC5.57□□□□□ -1.52
BDNFP23560 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC023141.6-201ENST00000429418 337 ntBASIC5.57□□□□□ -1.52
BDNFP23560 MTND2P40-201ENST00000436718 841 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.57□□□□□ -1.52
BDNFP23560 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.57□□□□□ -1.52
BDNFP23560 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.57□□□□□ -1.52
BDNFP23560 CYCSP42-201ENST00000450823 238 ntBASIC5.57□□□□□ -1.52
BDNFP23560 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BDNFP23560 AC011037.1-201ENST00000483964 558 ntBASIC5.57□□□□□ -1.52
BDNFP23560 RPL32P9-201ENST00000487963 407 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC147055.3-201ENST00000510547 851 ntBASIC5.57□□□□□ -1.52
BDNFP23560 GTF2F2P1-201ENST00000511083 675 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC008562.1-201ENST00000521763 330 ntBASIC5.57□□□□□ -1.52
BDNFP23560 OR4A46P-201ENST00000527255 933 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC134349.2-201ENST00000535136 910 ntBASIC5.57□□□□□ -1.52
BDNFP23560 AC024940.3-201ENST00000538551 316 ntBASIC5.57□□□□□ -1.52
BDNFP23560 HMGN2P6-201ENST00000551091 273 ntBASIC5.57□□□□□ -1.52
BDNFP23560 OR4U1P-201ENST00000554958 912 ntBASIC5.57□□□□□ -1.52
BDNFP23560 OR1F2P-201ENST00000570470 933 ntBASIC5.57□□□□□ -1.52
BDNFP23560 MIR4458-201ENST00000578872 75 ntBASIC5.57□□□□□ -1.52
BDNFP23560 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
BDNFP23560 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms