Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A1P20908 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
COL5A1P20908 OR51H2P-202ENST00000641424 3046 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A1P20908 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A1P20908 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A1P20908 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL5A1P20908 RNU6-525P-201ENST00000363685 104 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 RN7SKP280-201ENST00000364196 304 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 RNA5SP366-201ENST00000365454 123 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 AL607077.1-201ENST00000401718 499 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A1P20908 E2F6P2-201ENST00000420708 748 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 EIF4HP2-201ENST00000424380 563 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 BX119904.3-201ENST00000428194 957 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.46□□□□□ -1.7
COL5A1P20908 VN1R34P-201ENST00000447387 883 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.46□□□□□ -1.7
COL5A1P20908 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC4.46□□□□□ -1.7
COL5A1P20908 AC005868.1-201ENST00000536421 331 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.46□□□□□ -1.7
COL5A1P20908 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 AC005261.4-201ENST00000600047 1385 ntBASIC4.46□□□□□ -1.7
COL5A1P20908 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC4.46□□□□□ -1.7
COL5A1P20908 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL5A1P20908 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL5A1P20908 AL592182.3-201ENST00000642132 3304 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.45□□□□□ -1.7
COL5A1P20908 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
COL5A1P20908 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL5A1P20908 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 MIR383-201ENST00000362257 73 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 RPS26P8-201ENST00000393490 348 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 ATP5F1P2-201ENST00000398143 760 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 NPM1P37-201ENST00000403105 874 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 AL139039.2-201ENST00000407436 479 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 TMSB10P2-201ENST00000416049 131 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 AL358176.3-201ENST00000420757 454 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 PHBP16-201ENST00000446318 950 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.45□□□□□ -1.7
COL5A1P20908 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.45□□□□□ -1.7
COL5A1P20908 SNORA67.7-201ENST00000516664 135 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.45□□□□□ -1.7
COL5A1P20908 AP000827.1-201ENST00000527814 258 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.45□□□□□ -1.7
COL5A1P20908 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.45□□□□□ -1.7
COL5A1P20908 RN7SL176P-201ENST00000580352 264 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.45□□□□□ -1.7
COL5A1P20908 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
COL5A1P20908 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL5A1P20908 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL5A1P20908 AL031119.1-201ENST00000404707 1879 ntBASIC4.45□□□□□ -1.7
COL5A1P20908 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 AL161912.2-201ENST00000565707 3007 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 AC021146.4-201ENST00000309229 279 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 AL672167.2-201ENST00000377164 879 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 Z98745.1-201ENST00000402553 494 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 TMBIM7P-201ENST00000418074 855 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 AC011998.1-201ENST00000433403 117 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 AC108475.1-201ENST00000507880 950 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.44□□□□□ -1.7
COL5A1P20908 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.44□□□□□ -1.7
COL5A1P20908 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.44□□□□□ -1.7
COL5A1P20908 AC017100.2-201ENST00000584628 355 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL5A1P20908 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL5A1P20908 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL5A1P20908 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.44□□□□□ -1.7
COL5A1P20908 AL672167.1-204ENST00000641875 3017 ntBASIC4.44□□□□□ -1.7
COL5A1P20908 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms