Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CLDN3O15551 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CLDN3O15551 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CLDN3O15551 AL034370.1-201ENST00000397254 1590 ntBASIC5.2□□□□□ -1.58
CLDN3O15551 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CLDN3O15551 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.19□□□□□ -1.58
CLDN3O15551 AL731566.1-201ENST00000620490 1937 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
CLDN3O15551 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CLDN3O15551 RNU1-82P-201ENST00000390851 165 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CLDN3O15551 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 TMBIM7P-201ENST00000418074 855 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 VN1R37P-201ENST00000419096 748 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 RPL36AP10-201ENST00000421785 322 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 CYCSP11-201ENST00000436426 315 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.19□□□□□ -1.58
CLDN3O15551 RPL31P53-201ENST00000457065 348 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 CDH12P4-201ENST00000517835 295 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 CDH12P3-201ENST00000517935 295 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 CDH12P1-201ENST00000518435 295 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 MIR3936-201ENST00000584304 110 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 AC087283.1-201ENST00000604029 1074 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.19□□□□□ -1.58
CLDN3O15551 AC107905.1-201ENST00000616204 426 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.19□□□□□ -1.58
CLDN3O15551 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 AC107068.1-201ENST00000563286 4218 ntBASIC5.19□□□□□ -1.58
CLDN3O15551 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
CLDN3O15551 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CLDN3O15551 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CLDN3O15551 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 AC010132.2-201ENST00000295493 1043 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 RNU6-386P-201ENST00000362650 107 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 RNVU1-6-201ENST00000364688 164 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CLDN3O15551 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 RPL5P19-201ENST00000404228 893 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 RNU2-50P-201ENST00000410494 143 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 RPL37P18-201ENST00000411602 243 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 AL591848.1-201ENST00000413092 322 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 E2F6P2-201ENST00000420708 748 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 FABP7P1-201ENST00000424004 391 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.18□□□□□ -1.58
CLDN3O15551 SEPT14P1-201ENST00000458703 648 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 RPL7AP10-201ENST00000481016 791 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 AC147055.1-201ENST00000509261 750 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 AC109635.6-201ENST00000525487 1113 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 AC087477.6-201ENST00000559595 843 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.18□□□□□ -1.58
CLDN3O15551 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.18□□□□□ -1.58
CLDN3O15551 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 AC020763.5-201ENST00000623298 430 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 SALL4P2-201ENST00000423288 2910 ntBASIC5.18□□□□□ -1.58
CLDN3O15551 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CLDN3O15551 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.18□□□□□ -1.58
CLDN3O15551 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.18□□□□□ -1.58
CLDN3O15551 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CLDN3O15551 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 AC010928.1-201ENST00000592477 1447 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.17□□□□□ -1.58
CLDN3O15551 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 AL672167.1-205ENST00000641112 3080 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 AL590240.1-201ENST00000334118 313 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLDN3O15551 U3.35-201ENST00000408405 208 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.17□□□□□ -1.58
CLDN3O15551 GLUD1P9-201ENST00000420997 1173 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 EIF4HP2-201ENST00000424380 563 ntBASIC5.17□□□□□ -1.58
CLDN3O15551 RPS26P4-201ENST00000431743 355 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms