Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MIR105-2-201ENST00000385083 81 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 GAPDHP15-201ENST00000398586 975 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL109941.1-201ENST00000401925 229 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 RN7SKP247-201ENST00000411094 308 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 RN7SKP100-201ENST00000411258 284 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 BX510359.2-201ENST00000417920 305 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC004074.1-201ENST00000421810 1063 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC005154.2-201ENST00000438110 379 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 SNRPFP2-201ENST00000440710 251 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 ISCUP1-201ENST00000454451 448 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 RPL36AP41-201ENST00000493820 306 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AK4P6-201ENST00000505168 528 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 PCNPP1-201ENST00000552501 511 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL110118.1-201ENST00000553543 400 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 RPL21P7-201ENST00000557463 483 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC091178.1-203ENST00000584586 279 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL031320.1-201ENST00000604177 357 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC133644.2-201ENST00000608142 540 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 MIR7155-201ENST00000615925 56 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 CR383656.5-201ENST00000547616 1340 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AL391684.1-202ENST00000641293 1636 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 AC112255.1-201ENST00000624070 2493 ntBASIC4.43□□□□□ -1.7
VPS29Q9UBQ0 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 NEAT1-202ENST00000501122 22743 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL645733.1-201ENST00000402250 217 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 RPL21P91-201ENST00000429231 479 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 ARL4AP3-201ENST00000441452 574 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL935212.3-201ENST00000450729 284 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AC018638.3-201ENST00000461273 132 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AC104763.1-201ENST00000475274 360 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AC098583.1-201ENST00000480875 255 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 RNA5SP446-201ENST00000515955 82 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 RNU2-30P-201ENST00000516209 141 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 AL121890.2-201ENST00000617644 465 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 SDAD1P1-202ENST00000524156 2051 ntBASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS29Q9UBQ0 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 LINC01355-201ENST00000566551 5444 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 SEPT7P8-201ENST00000413308 775 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC013268.2-201ENST00000420753 337 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 SCARNA10-201ENST00000459255 330 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC110749.1-201ENST00000462007 357 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 RN7SL329P-201ENST00000467740 299 ntBASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS29Q9UBQ0 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms