Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AL512329.2-201ENST00000607350 548 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC126915.2-201ENST00000610957 190 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC022467.1-201ENST00000614738 749 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AP002505.2-201ENST00000623585 696 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC009643.2-201ENST00000603543 1448 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 SCN1A-220ENST00000641603 12506 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 Z95327.2-201ENST00000414579 1873 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 SNORA66-201ENST00000384792 133 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AL078599.1-201ENST00000402075 293 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 MIR1286-201ENST00000408112 78 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AP000534.2-201ENST00000412729 568 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 TRGV6-201ENST00000417928 299 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 RPL12P28-201ENST00000430852 489 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 Z85994.2-201ENST00000434327 452 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AL606490.1-201ENST00000452266 765 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC092647.2-201ENST00000452998 253 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 RPS6P2-201ENST00000454208 705 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 RN7SL517P-201ENST00000462240 305 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC097484.1-201ENST00000471148 389 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC090686.1-201ENST00000481577 749 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 Y_RNA.719-201ENST00000517156 106 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 AC105254.2-201ENST00000603636 436 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AL049794.2-201ENST00000616301 365 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 AP003497.2-201ENST00000624220 967 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 ECM1P2-201ENST00000503354 1577 ntBASIC4.95□□□□□ -1.62
VPS39Q96JC1 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS39Q96JC1 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS39Q96JC1 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC000123.3-201ENST00000624029 4975 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 MTCO1P11-201ENST00000429111 1528 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 RNU4-23P-201ENST00000362839 140 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 RN7SKP269-201ENST00000365545 319 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 MIR92A2-201ENST00000385299 75 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 AL136116.2-201ENST00000404020 785 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 CKS1BP6-201ENST00000424932 240 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 HMGB1P32-201ENST00000425971 565 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 OR7E125P-201ENST00000443450 846 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 RN7SL244P-201ENST00000493405 297 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC005912.1-201ENST00000495392 255 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 SMARCE1P4-201ENST00000523647 241 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS39Q96JC1 EIF1P5-201ENST00000585002 234 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS39Q96JC1 MIR6862-1-201ENST00000613016 70 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 MIR6862-2-201ENST00000614755 70 ntBASIC4.94□□□□□ -1.62
VPS39Q96JC1 AC019206.1-201ENST00000621938 425 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms