Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL136231.1-201ENST00000429407 730 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
COL5A3P25940 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.63□□□□□ -1.51
COL5A3P25940 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.63□□□□□ -1.51
COL5A3P25940 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 AC027216.1-201ENST00000577726 685 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 MIR4444-1-201ENST00000581696 74 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 MIR4444-2-201ENST00000584390 74 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 AC130352.1-201ENST00000602979 661 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL5A3P25940 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL5A3P25940 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 MAPK10-349ENST00000641767 3661 ntBASIC5.63□□□□□ -1.51
COL5A3P25940 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.63□□□□□ -1.51
COL5A3P25940 RN7SKP235-201ENST00000410662 305 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 SNORA74C-2-201ENST00000411179 201 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 RPL21P91-201ENST00000429231 479 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 NPM1P41-201ENST00000512920 831 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 MIR8059-201ENST00000620427 81 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 AL445363.3-201ENST00000623080 671 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 AP005435.3-201ENST00000531260 3198 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL5A3P25940 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.62□□□□□ -1.51
COL5A3P25940 YY1P1-201ENST00000427625 668 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 RPL5P2-201ENST00000429598 854 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.62□□□□□ -1.51
COL5A3P25940 RPS27AP17-201ENST00000463344 455 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 NDUFB4P12-201ENST00000513465 390 ntBASIC5.62□□□□□ -1.51
COL5A3P25940 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL5A3P25940 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL5A3P25940 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL5A3P25940 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL5A3P25940 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
COL5A3P25940 AC239868.2-201ENST00000564237 4527 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.61□□□□□ -1.51
COL5A3P25940 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.61□□□□□ -1.51
COL5A3P25940 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
COL5A3P25940 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 AC009963.4-201ENST00000448535 339 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.61□□□□□ -1.51
COL5A3P25940 snoU13.22-201ENST00000459428 104 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 AL132838.2-201ENST00000492041 314 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.61□□□□□ -1.51
COL5A3P25940 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.61□□□□□ -1.51
COL5A3P25940 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.61□□□□□ -1.51
COL5A3P25940 MIR3158-1-201ENST00000583596 81 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 RNU4-89P-201ENST00000607443 133 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 CDRT1-208ENST00000630868 794 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 AC012442.3-202ENST00000636742 206 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 LINC01808-202ENST00000641680 1116 ntBASIC5.61□□□□□ -1.51
COL5A3P25940 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
COL5A3P25940 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
COL5A3P25940 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL5A3P25940 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL5A3P25940 RNA5SP151-201ENST00000365632 117 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL5A3P25940 RPL17P50-201ENST00000396131 546 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 RPS7P7-201ENST00000463499 571 ntBASIC5.6□□□□□ -1.51
COL5A3P25940 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.6□□□□□ -1.51
COL5A3P25940 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms