Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.22□□□□□ -1.73
USF1P22415 AL133406.3-201ENST00000606817 541 ntBASIC4.22□□□□□ -1.73
USF1P22415 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 AP000346.3-201ENST00000622821 210 ntBASIC4.22□□□□□ -1.73
USF1P22415 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
USF1P22415 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.22□□□□□ -1.73
USF1P22415 AP001642.1-201ENST00000624727 2117 ntBASIC4.22□□□□□ -1.73
USF1P22415 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.22□□□□□ -1.73
USF1P22415 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.22□□□□□ -1.73
USF1P22415 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USF1P22415 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.73
USF1P22415 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
USF1P22415 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
USF1P22415 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
USF1P22415 AC087190.4-201ENST00000574616 8334 ntBASIC4.21□□□□□ -1.73
USF1P22415 AC000374.1-201ENST00000434698 1745 ntBASIC4.21□□□□□ -1.73
USF1P22415 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.21□□□□□ -1.74
USF1P22415 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
USF1P22415 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
USF1P22415 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.21□□□□□ -1.74
USF1P22415 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.21□□□□□ -1.74
USF1P22415 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.21□□□□□ -1.74
USF1P22415 RPL7L1P1-201ENST00000448259 785 ntBASIC4.21□□□□□ -1.74
USF1P22415 AC073264.2-201ENST00000448886 166 ntBASIC4.21□□□□□ -1.74
USF1P22415 AP000926.3-201ENST00000497201 299 ntBASIC4.21□□□□□ -1.74
USF1P22415 AC097173.1-201ENST00000505862 819 ntBASIC4.21□□□□□ -1.74
USF1P22415 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.21□□□□□ -1.74
USF1P22415 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.21□□□□□ -1.74
USF1P22415 AP006289.1-201ENST00000538089 277 ntBASIC4.21□□□□□ -1.74
USF1P22415 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.21□□□□□ -1.74
USF1P22415 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.21□□□□□ -1.74
USF1P22415 MIR4697-201ENST00000582977 78 ntBASIC4.21□□□□□ -1.74
USF1P22415 OR7M1P-201ENST00000608946 533 ntBASIC4.21□□□□□ -1.74
USF1P22415 MIR6780A-201ENST00000615089 68 ntBASIC4.21□□□□□ -1.74
USF1P22415 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.21□□□□□ -1.74
USF1P22415 AC012414.7-202ENST00000622705 1090 ntBASIC4.21□□□□□ -1.74
USF1P22415 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 AC083843.3-201ENST00000623679 2186 ntBASIC4.21□□□□□ -1.74
USF1P22415 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
USF1P22415 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.21□□□□□ -1.74
USF1P22415 AL731566.1-201ENST00000620490 1937 ntBASIC4.21□□□□□ -1.74
USF1P22415 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USF1P22415 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 AC099654.2-201ENST00000433031 1980 ntBASIC4.2□□□□□ -1.74
USF1P22415 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
USF1P22415 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 MT-RNR1-201ENST00000389680 954 ntBASIC4.2□□□□□ -1.74
USF1P22415 RNA5SP105-201ENST00000391123 113 ntBASIC4.2□□□□□ -1.74
USF1P22415 RPL5P19-201ENST00000404228 893 ntBASIC4.2□□□□□ -1.74
USF1P22415 RNA5SP113-201ENST00000410486 84 ntBASIC4.2□□□□□ -1.74
USF1P22415 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.2□□□□□ -1.74
USF1P22415 AC007559.1-201ENST00000428736 355 ntBASIC4.2□□□□□ -1.74
USF1P22415 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 AC009238.2-201ENST00000431026 355 ntBASIC4.2□□□□□ -1.74
USF1P22415 RPL7P11-201ENST00000437586 658 ntBASIC4.2□□□□□ -1.74
USF1P22415 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.2□□□□□ -1.74
USF1P22415 OR1H1P-201ENST00000448731 937 ntBASIC4.2□□□□□ -1.74
USF1P22415 IGHV5-78-201ENST00000450948 295 ntBASIC4.2□□□□□ -1.74
USF1P22415 AL356390.1-201ENST00000455684 397 ntBASIC4.2□□□□□ -1.74
USF1P22415 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 RN7SL459P-201ENST00000481078 302 ntBASIC4.2□□□□□ -1.74
USF1P22415 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 CCNHP1-201ENST00000513311 678 ntBASIC4.2□□□□□ -1.74
USF1P22415 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 GCSHP4-201ENST00000538792 439 ntBASIC4.2□□□□□ -1.74
USF1P22415 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
USF1P22415 CD24P2-201ENST00000565486 219 ntBASIC4.2□□□□□ -1.74
USF1P22415 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 AP005901.4-201ENST00000577336 569 ntBASIC4.2□□□□□ -1.74
USF1P22415 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 AL512782.1-201ENST00000603093 364 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms