Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 AC021242.1-201ENST00000507315 2035 ntBASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TM9SF3Q9HD45 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 OR9G4-201ENST00000302957 984 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AC017079.1-201ENST00000333650 415 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 RN7SKP113-201ENST00000363891 295 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 ARAFP1-201ENST00000422172 605 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 GTF3AP5-201ENST00000442645 697 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 OR7E125P-201ENST00000443450 846 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AL354714.3-201ENST00000447284 493 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 EIF4A1P11-201ENST00000451239 222 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AC096741.1-201ENST00000472250 846 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 UBA52P3-201ENST00000491303 382 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 MIR3667-201ENST00000581025 74 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AC008745.1-201ENST00000604064 271 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AL008729.2-201ENST00000606393 473 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 AP005432.2-201ENST00000608162 586 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 MIR6839-201ENST00000620425 113 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 MIR7641-1-201ENST00000627518 61 ntBASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TM9SF3Q9HD45 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC090971.4-201ENST00000560291 1800 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 Z95331.1-201ENST00000623075 23112 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 ASNSP1-201ENST00000518311 1939 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC019155.1-201ENST00000382242 574 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AL021331.1-201ENST00000402817 582 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPL10P10-201ENST00000403509 664 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPS16P5-201ENST00000406501 404 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RAB28P1-201ENST00000411517 641 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPL6P29-201ENST00000414863 865 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RCC2P2-201ENST00000422174 918 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPS26P47-201ENST00000427219 348 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC092017.2-201ENST00000427600 362 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 CYCSP11-201ENST00000436426 315 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPL7P11-201ENST00000437586 658 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RPL21P133-201ENST00000443666 476 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 CYCSP24-201ENST00000445119 316 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 NDUFA12P1-201ENST00000455914 406 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RN7SL443P-201ENST00000464331 290 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC097173.1-201ENST00000505862 819 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 GAPDHP56-201ENST00000506031 988 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 MRPS33P2-201ENST00000507850 322 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 RAB9BP1-201ENST00000519581 626 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 OR5AN2P-201ENST00000534535 896 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 AC115989.2-201ENST00000578640 563 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 MIR7703-201ENST00000620784 77 ntBASIC5.02□□□□□ -1.61
TM9SF3Q9HD45 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms