Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
EBF3Q9H4W6 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
EBF3Q9H4W6 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
EBF3Q9H4W6 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 DDX6P1-205ENST00000441966 1436 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 INTS6P1-201ENST00000504674 2530 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 RNA5SP455-201ENST00000365190 119 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 RNU6-1000P-201ENST00000391066 106 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC073465.2-201ENST00000440938 498 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 RNFT1P2-201ENST00000443064 757 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 TXNP2-201ENST00000443918 295 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 TRY2P-201ENST00000448860 689 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 OR52E3P-201ENST00000452083 936 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 PSAT1P4-201ENST00000466500 526 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC005412.2-201ENST00000492004 341 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 NPM1P21-201ENST00000513394 762 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 SCARNA20.4-201ENST00000516969 131 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 NPM1P52-201ENST00000518264 846 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 VTA1P2-201ENST00000520205 911 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 HIGD1AP5-201ENST00000529959 259 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 PCNPP1-201ENST00000552501 511 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 CKS1BP1-201ENST00000555221 240 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AL359715.3-201ENST00000569267 2123 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 RN7SL290P-201ENST00000578661 300 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC112694.2-201ENST00000623697 768 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC004943.3-201ENST00000624116 600 ntBASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.4□□□□□ -1.54
EBF3Q9H4W6 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AL513185.3-201ENST00000433335 1300 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AC110792.3-201ENST00000595906 1614 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AC087565.3-202ENST00000642085 1603 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AL731532.2-201ENST00000623542 1953 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 CDY11P-201ENST00000447168 1651 ntBASIC5.4□□□□□ -1.55
EBF3Q9H4W6 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
EBF3Q9H4W6 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AC003973.3-201ENST00000624863 2822 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL353625.1-202ENST00000366273 571 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 SNORD116-2-201ENST00000384274 95 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 SNORD116-6-201ENST00000384711 96 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 RNY3P9-201ENST00000384727 106 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL356057.1-202ENST00000402263 756 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 REREP1Y-201ENST00000422655 198 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL121882.1-201ENST00000422893 417 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 RPS4XP16-201ENST00000427198 791 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL360081.1-201ENST00000428299 555 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 VN1R108P-201ENST00000431580 830 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.39□□□□□ -1.55
EBF3Q9H4W6 REREP2Y-201ENST00000439103 200 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AC073648.4-201ENST00000442655 781 ntBASIC5.39□□□□□ -1.55
EBF3Q9H4W6 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms