Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 HSPE1P22-201ENST00000456856 327 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 RN7SL826P-201ENST00000479724 288 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC116562.1-201ENST00000485355 781 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 ATG10-AS1-201ENST00000504846 648 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 GAPDHP56-201ENST00000506031 988 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC117525.1-201ENST00000515228 503 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 Y_RNA.719-201ENST00000517156 106 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AP006245.2-201ENST00000522004 300 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC022882.1-201ENST00000532142 501 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 PCNPP1-201ENST00000552501 511 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC011840.5-201ENST00000582125 771 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC007448.1-201ENST00000582714 234 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC005084.1-201ENST00000605160 304 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC022106.2-201ENST00000620114 757 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC006840.1-201ENST00000623069 542 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS35Q96QK1 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 AC126323.6-202ENST00000568092 3511 ntBASIC4.89□□□□□ -1.63
VPS35Q96QK1 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS35Q96QK1 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC099654.2-201ENST00000433031 1980 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 RNU6-670P-201ENST00000364312 104 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 SNORA51.8-201ENST00000384234 132 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RPL5P19-201ENST00000404228 893 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 COX6B1P1-201ENST00000415962 213 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 OR2AM1P-201ENST00000422137 422 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC104333.2-201ENST00000422630 192 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AJ239321.1-201ENST00000424255 564 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 MTND4LP13-201ENST00000425022 298 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RPL12P3-201ENST00000440080 396 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC112498.1-201ENST00000444401 332 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 SUMO2P1-206ENST00000445436 284 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AL157385.1-201ENST00000446973 268 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 SLC25A18P1-201ENST00000449385 454 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RPL7P61-201ENST00000451721 751 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 snoU13.20-201ENST00000459180 104 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RN7SL610P-201ENST00000463845 291 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RPL7P16-201ENST00000479738 738 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 RNA5SP464-201ENST00000516251 108 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AP001922.4-201ENST00000526967 290 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 OR5D15P-201ENST00000531671 942 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 GCSHP4-201ENST00000538792 439 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC020915.5-201ENST00000596836 964 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AL353600.1-201ENST00000608148 251 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 RMST_5.1-201ENST00000618704 126 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AL596275.2-204ENST00000641628 552 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 AL596275.2-206ENST00000641957 626 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC100778.3-201ENST00000580060 1750 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS35Q96QK1 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
VPS35Q96QK1 AC063976.2-201ENST00000425667 3556 ntBASIC4.88□□□□□ -1.63
VPS35Q96QK1 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
VPS35Q96QK1 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS35Q96QK1 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS35Q96QK1 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS35Q96QK1 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS35Q96QK1 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS35Q96QK1 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS35Q96QK1 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS35Q96QK1 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS35Q96QK1 RN7SKP149-201ENST00000363008 344 ntBASIC4.87□□□□□ -1.63
VPS35Q96QK1 RNU6-618P-201ENST00000363518 112 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms