Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 POLR2KP1-201ENST00000553226 168 ntBASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AC013244.1-201ENST00000604279 193 ntBASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AL162431.4-201ENST00000604674 411 ntBASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AC092747.4-201ENST00000620519 1861 ntBASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4AQ9BY43 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AL031119.1-201ENST00000404707 1879 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 TAF9BP2-201ENST00000400856 499 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AL354868.1-201ENST00000417077 482 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 MTND4P24-201ENST00000424002 397 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 YY1P1-201ENST00000427625 668 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AL353093.1-201ENST00000441292 436 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 RPL7P31-201ENST00000450192 724 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC058823.1-201ENST00000485315 474 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 RPL15P21-201ENST00000495592 567 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC006427.1-201ENST00000514359 712 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 RNA5SP92-201ENST00000516437 110 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 RNU6-362P-201ENST00000516736 90 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 CSNK1A1P1-202ENST00000563423 981 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 ZNF92P3-201ENST00000596594 954 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AP000769.2-201ENST00000602344 396 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC009163.6-201ENST00000612367 342 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC025016.1-201ENST00000616746 682 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC099494.2-201ENST00000623371 978 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AP003072.4-201ENST00000624580 310 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 SCARNA15-201ENST00000607520 4325 ntBASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.79□□□□□ -1.32
CHMP4AQ9BY43 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 RNU1-43P-201ENST00000365052 165 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 RPL7AP49-201ENST00000429522 581 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AL591438.1-201ENST00000433508 581 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 ABCC13-202ENST00000463099 3842 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 RN7SL222P-201ENST00000476452 299 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 RPS12P31-201ENST00000491419 398 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AC090819.1-201ENST00000523800 1111 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 OR8G3P-201ENST00000533406 921 ntBASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC6.78□□□□□ -1.32
CHMP4AQ9BY43 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms