Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDAC4P56524 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.47□□□□□ -1.53
HDAC4P56524 AC006210.2-201ENST00000367074 1545 ntBASIC5.47□□□□□ -1.53
HDAC4P56524 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDAC4P56524 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HDAC4P56524 AC007342.7-201ENST00000624610 2337 ntBASIC5.47□□□□□ -1.53
HDAC4P56524 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HDAC4P56524 AC132825.1-201ENST00000463573 2247 ntBASIC5.47□□□□□ -1.53
HDAC4P56524 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.47□□□□□ -1.53
HDAC4P56524 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.47□□□□□ -1.53
HDAC4P56524 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
HDAC4P56524 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HDAC4P56524 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
HDAC4P56524 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
HDAC4P56524 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
HDAC4P56524 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HDAC4P56524 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HDAC4P56524 MUC2-202ENST00000613187 4845 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC112198.2-201ENST00000426589 6996 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 OR4K17-201ENST00000315543 1032 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HDAC4P56524 OR9K1P-201ENST00000326513 941 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 SNORA63.3-201ENST00000362682 132 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 GCNT6-201ENST00000379591 934 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HDAC4P56524 AC233289.1-201ENST00000403700 508 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 RPL12P9-201ENST00000412942 488 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.46□□□□□ -1.54
HDAC4P56524 EI24P4-201ENST00000423683 1078 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 NIPA2P1-201ENST00000426223 976 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 UBE2D3P3-201ENST00000426992 425 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.46□□□□□ -1.54
HDAC4P56524 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HDAC4P56524 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 AC092905.1-201ENST00000467527 949 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC021205.1-201ENST00000468797 348 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 MTCO2P9-201ENST00000503214 694 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.46□□□□□ -1.54
HDAC4P56524 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.46□□□□□ -1.54
HDAC4P56524 EIF3KP3-201ENST00000514461 639 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.46□□□□□ -1.54
HDAC4P56524 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.46□□□□□ -1.54
HDAC4P56524 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.46□□□□□ -1.54
HDAC4P56524 AL049779.2-201ENST00000553847 315 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC018552.1-201ENST00000562099 811 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AL391834.2-201ENST00000609982 546 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 MIR1264-201ENST00000616374 69 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AC090527.3-201ENST00000619041 548 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 AP001005.3-201ENST00000622049 129 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HDAC4P56524 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 AC133552.1-201ENST00000569988 4007 ntBASIC5.46□□□□□ -1.54
HDAC4P56524 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HDAC4P56524 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.46□□□□□ -1.54
HDAC4P56524 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.45□□□□□ -1.54
HDAC4P56524 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HDAC4P56524 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.45□□□□□ -1.54
HDAC4P56524 RAD1P1-201ENST00000231383 813 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HDAC4P56524 RNU6-792P-201ENST00000363490 107 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.45□□□□□ -1.54
HDAC4P56524 ARL2BPP3-201ENST00000421226 480 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 AL355433.1-201ENST00000422804 300 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 AC022022.1-201ENST00000430304 178 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 PTP4A1P3-201ENST00000433661 420 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 OR52E3P-201ENST00000452083 936 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 CALM1P2-201ENST00000452941 448 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 RPS6P2-201ENST00000454208 705 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 COPS8P2-201ENST00000473228 627 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 RPS4XP20-201ENST00000505751 772 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 AC112198.4-201ENST00000515450 351 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 OR8X1P-201ENST00000534542 869 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.45□□□□□ -1.54
HDAC4P56524 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.45□□□□□ -1.54
HDAC4P56524 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
HDAC4P56524 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.45□□□□□ -1.54
HDAC4P56524 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.45□□□□□ -1.54
HDAC4P56524 AL049777.1-201ENST00000622740 518 ntBASIC5.45□□□□□ -1.54
HDAC4P56524 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HDAC4P56524 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.45□□□□□ -1.54
HDAC4P56524 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.45□□□□□ -1.54
HDAC4P56524 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
HDAC4P56524 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.45□□□□□ -1.54
HDAC4P56524 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms