Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.98□□□□□ -1.61
COL4A4P53420 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC4.98□□□□□ -1.61
COL4A4P53420 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 LSM3P2-201ENST00000551246 273 ntBASIC4.98□□□□□ -1.61
COL4A4P53420 RPL7P50-201ENST00000600588 727 ntBASIC4.98□□□□□ -1.61
COL4A4P53420 AC243960.7-201ENST00000623532 707 ntBASIC4.98□□□□□ -1.61
COL4A4P53420 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC4.98□□□□□ -1.61
COL4A4P53420 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.98□□□□□ -1.61
COL4A4P53420 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 AL031119.1-201ENST00000404707 1879 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AL672167.1-204ENST00000641875 3017 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC4.97□□□□□ -1.61
COL4A4P53420 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC4.97□□□□□ -1.61
COL4A4P53420 AL360270.2-201ENST00000562952 5985 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 CASC19-206ENST00000641028 1430 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.97□□□□□ -1.61
COL4A4P53420 RNU6-761P-201ENST00000384148 107 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 TRAV35-201ENST00000390462 330 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 TMSB10P2-201ENST00000416049 131 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 AC013429.2-201ENST00000418798 781 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AC092162.1-201ENST00000432828 434 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 RPS17P8-201ENST00000434525 335 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 HSFY6P-201ENST00000445573 403 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AL162591.2-201ENST00000449634 317 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.97□□□□□ -1.61
COL4A4P53420 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.97□□□□□ -1.61
COL4A4P53420 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AC023043.4-201ENST00000612081 449 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AL035461.2-201ENST00000619201 524 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 AC011815.3-201ENST00000624194 473 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 RNA5SP196-201ENST00000625967 102 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL4A4P53420 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC4.97□□□□□ -1.61
COL4A4P53420 AL022393.1-201ENST00000625142 1677 ntBASIC4.97□□□□□ -1.61
COL4A4P53420 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL4A4P53420 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.96□□□□□ -1.61
COL4A4P53420 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
COL4A4P53420 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
COL4A4P53420 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
COL4A4P53420 AL022323.4-201ENST00000623980 13120 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
COL4A4P53420 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC4.96□□□□□ -1.61
COL4A4P53420 RPL23AP59-201ENST00000399415 461 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 NPM1P37-201ENST00000403105 874 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 PPIAP31-201ENST00000405422 495 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 CTSL3P-202ENST00000412179 788 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 BX119904.3-201ENST00000428194 957 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.96□□□□□ -1.61
COL4A4P53420 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.96□□□□□ -1.61
COL4A4P53420 RN7SL652P-201ENST00000577769 300 ntBASIC4.96□□□□□ -1.61
COL4A4P53420 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.96□□□□□ -1.61
COL4A4P53420 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL4A4P53420 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.96□□□□□ -1.62
COL4A4P53420 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.96□□□□□ -1.62
COL4A4P53420 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 OR51H2P-202ENST00000641424 3046 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.96□□□□□ -1.62
COL4A4P53420 AC008033.1-201ENST00000216407 1162 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 RN7SKP280-201ENST00000364196 304 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 Z74021.1-201ENST00000423610 407 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 RPS29P17-201ENST00000430795 166 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 MRPS21P3-201ENST00000436696 262 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 RRM2P4-201ENST00000441721 562 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 NUTF2P3-201ENST00000448540 384 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 RN7SL98P-201ENST00000462271 300 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 AC041039.1-201ENST00000485656 536 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.96□□□□□ -1.62
COL4A4P53420 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL4A4P53420 AC053481.3-201ENST00000577881 843 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 SNORA74C-1-201ENST00000580726 201 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.96□□□□□ -1.62
COL4A4P53420 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.96□□□□□ -1.62
COL4A4P53420 AL121932.1-201ENST00000605542 214 ntBASIC4.96□□□□□ -1.62
COL4A4P53420 AC099676.1-201ENST00000608886 657 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms