Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 HMGB1P23-201ENST00000518743 568 ntBASIC6.65□□□□□ -1.34
LIG3P49916 OR5D2P-201ENST00000524390 911 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.65□□□□□ -1.34
LIG3P49916 ZNF519P3-201ENST00000557158 1032 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.65□□□□□ -1.34
LIG3P49916 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.65□□□□□ -1.34
LIG3P49916 AC245052.7-201ENST00000601161 359 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG3P49916 AC114477.1-201ENST00000605097 605 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC093388.1-201ENST00000609166 430 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC116651.1-201ENST00000609724 556 ntBASIC6.65□□□□□ -1.34
LIG3P49916 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.34
LIG3P49916 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
LIG3P49916 AL359955.1-201ENST00000455242 3275 ntBASIC6.65□□□□□ -1.34
LIG3P49916 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIG3P49916 AC093311.1-201ENST00000506586 2021 ntBASIC6.65□□□□□ -1.35
LIG3P49916 AC016745.2-201ENST00000608834 3443 ntBASIC6.65□□□□□ -1.35
LIG3P49916 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
LIG3P49916 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIG3P49916 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.65□□□□□ -1.35
LIG3P49916 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIG3P49916 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIG3P49916 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
LIG3P49916 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIG3P49916 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.65□□□□□ -1.35
LIG3P49916 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 AC116158.1-201ENST00000560231 2129 ntBASIC6.64□□□□□ -1.35
LIG3P49916 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 OR52E6-202ENST00000379946 954 ntBASIC6.64□□□□□ -1.35
LIG3P49916 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.64□□□□□ -1.35
LIG3P49916 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 MTND1P21-201ENST00000412991 285 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AL450992.3-201ENST00000413192 568 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 AC092651.1-201ENST00000426110 312 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC002069.1-201ENST00000429649 1159 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 RBMX2P4-201ENST00000441256 376 ntBASIC6.64□□□□□ -1.35
LIG3P49916 COL11A2P1-205ENST00000441798 676 ntBASIC6.64□□□□□ -1.35
LIG3P49916 RPL5P10-201ENST00000445207 894 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 AC005017.1-201ENST00000482002 490 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC098799.3-201ENST00000506095 438 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 AC108475.1-201ENST00000507880 950 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC116347.2-201ENST00000514912 523 ntBASIC6.64□□□□□ -1.35
LIG3P49916 IGKV2D-10-201ENST00000520194 281 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AP001189.2-201ENST00000527320 189 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AP003033.2-201ENST00000528901 805 ntBASIC6.64□□□□□ -1.35
LIG3P49916 OR52K3P-201ENST00000531655 943 ntBASIC6.64□□□□□ -1.35
LIG3P49916 OR4A43P-201ENST00000532938 908 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 AC074029.1-201ENST00000552531 1044 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC138207.8-204ENST00000579588 527 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC090312.2-201ENST00000582687 378 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC090616.1-201ENST00000583895 447 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.64□□□□□ -1.35
LIG3P49916 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 AC007684.1-201ENST00000609671 477 ntBASIC6.64□□□□□ -1.35
LIG3P49916 MIR6823-201ENST00000622118 61 ntBASIC6.64□□□□□ -1.35
LIG3P49916 AC012414.7-202ENST00000622705 1090 ntBASIC6.64□□□□□ -1.35
LIG3P49916 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.64□□□□□ -1.35
LIG3P49916 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.64□□□□□ -1.35
LIG3P49916 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms