Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL049874.2-201ENST00000492636 288 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 RNU1-45P-201ENST00000517191 141 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 MTCO1P49-201ENST00000523429 802 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 AP001804.2-201ENST00000533932 910 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 OR8R1P-201ENST00000543943 764 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.95□□□□□ -1.46
COL18A1P39060 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.95□□□□□ -1.46
COL18A1P39060 AC015804.1-201ENST00000622935 435 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL18A1P39060 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC5.94□□□□□ -1.46
COL18A1P39060 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL18A1P39060 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL18A1P39060 CEACAMP8-201ENST00000413902 580 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 SNRPFP1-201ENST00000414761 252 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.94□□□□□ -1.46
COL18A1P39060 AC245028.2-201ENST00000458673 253 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 RPS27AP13-201ENST00000498403 237 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.94□□□□□ -1.46
COL18A1P39060 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.94□□□□□ -1.46
COL18A1P39060 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.94□□□□□ -1.46
COL18A1P39060 AC007546.1-201ENST00000619452 559 ntBASIC5.94□□□□□ -1.46
COL18A1P39060 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL18A1P39060 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL18A1P39060 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.94□□□□□ -1.46
COL18A1P39060 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL18A1P39060 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.93□□□□□ -1.46
COL18A1P39060 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL18A1P39060 MIR3065-201ENST00000390137 79 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
COL18A1P39060 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 MIR2116-201ENST00000517221 80 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 MIR4286-201ENST00000580651 93 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 BPIFA4P-203ENST00000603168 689 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC015914.2-201ENST00000618167 288 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC007159.1-201ENST00000566529 4706 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 DDX18P5-201ENST00000534547 1306 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AC104260.2-201ENST00000623551 3497 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.93□□□□□ -1.46
COL18A1P39060 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.93□□□□□ -1.46
COL18A1P39060 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 AC097374.1-203ENST00000400783 485 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AC009237.10-201ENST00000414112 510 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 RCC2P2-201ENST00000422174 918 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.93□□□□□ -1.46
COL18A1P39060 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 CYP1D1P-201ENST00000416662 1433 ntBASIC5.93□□□□□ -1.46
COL18A1P39060 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL18A1P39060 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL18A1P39060 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL18A1P39060 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.92□□□□□ -1.46
COL18A1P39060 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.92□□□□□ -1.46
COL18A1P39060 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.92□□□□□ -1.46
COL18A1P39060 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL18A1P39060 AC099654.3-201ENST00000447087 1546 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL18A1P39060 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL18A1P39060 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
COL18A1P39060 CASC19-206ENST00000641028 1430 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 OR13Z1P-201ENST00000416141 834 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.92□□□□□ -1.46
COL18A1P39060 AC104333.2-201ENST00000422630 192 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 AL354766.1-201ENST00000423396 542 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL18A1P39060 AL157831.1-201ENST00000426134 473 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 YY1P1-201ENST00000427625 668 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 AL136231.1-201ENST00000429407 730 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 AC114495.1-201ENST00000441274 436 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.92□□□□□ -1.46
COL18A1P39060 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.92□□□□□ -1.46
COL18A1P39060 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.92□□□□□ -1.46
COL18A1P39060 MIR3158-1-201ENST00000583596 81 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 IPO5P1-202ENST00000600039 287 ntBASIC5.92□□□□□ -1.46
COL18A1P39060 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL18A1P39060 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.92□□□□□ -1.46
COL18A1P39060 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL18A1P39060 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.91□□□□□ -1.46
COL18A1P39060 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms